BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4090.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamida...   406   e-115
gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspiril...   312   1e-86

>gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamidase
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  406 bits (1043), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/203 (94%), Positives = 201/203 (99%)

Query: 1   MQTVINKPENFASYVYHDKAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVTG 60
           MQTV+NKPENFASYVYHD+AFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRV+G
Sbjct: 1   MQTVVNKPENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSG 60

Query: 61  VGGMNHFMLPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLR 120
           VGGMNHFMLPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLR
Sbjct: 61  VGGMNHFMLPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLR 120

Query: 121 GMTAMNVGERNAAFVKNYLSAEKIRVVAEDLNDVWPRKVHFFPRTGKVLVKKIKDAGADL 180
           GM AMNVGERNAAFV+++LSAEKIRVVAEDLND+WPRKVHFFPRTGKVLVKKIK+AGADL
Sbjct: 121 GMNAMNVGERNAAFVRSFLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKEAGADL 180

Query: 181 VSREREYASKLQAKPVGGEIDLF 203
            SREREYAS+LQAKPVGGEIDLF
Sbjct: 181 TSREREYASRLQAKPVGGEIDLF 203


>gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 201

 Score =  312 bits (799), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 149/196 (76%), Positives = 170/196 (86%), Gaps = 1/196 (0%)

Query: 9   ENFASYVYHDKAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVTGVGGMNHFM 68
           E  AS +Y+D+ FDC  AKILPGEY++T +DMMIVTVLGSCVSAC+RDRV+G+GGMNHFM
Sbjct: 6   EQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65

Query: 69  LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMTAMNVG 128
           LPDGGG+  SPVSAS RYGTYAMEVLINDVLK+GARRENLE KVFGGG VLRG +A+NVG
Sbjct: 66  LPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAINVG 125

Query: 129 ERNAAFVKNYLSAEKIRVVAEDLNDVWPRKVHFFPRTGKVLVKKIKDAGAD-LVSREREY 187
           ERNA FV+ YL AE IRVVAEDLND++PRKV+FFPRTGKVLVKK+K    + LV RE+ Y
Sbjct: 126 ERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREKAY 185

Query: 188 ASKLQAKPVGGEIDLF 203
           ASKL  KPVGGE+DLF
Sbjct: 186 ASKLVTKPVGGEVDLF 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 624,870
Number of extensions: 24510
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)