BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4089.p
         (548 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313510|ref|YP_003777602.1| malate:quinone oxidoreductase [...  1077   0.0  

>gi|300313510|ref|YP_003777602.1| malate:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 549

 Score = 1077 bits (2784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/549 (94%), Positives = 537/549 (97%), Gaps = 1/549 (0%)

Query: 1   MLKKSFLAMLGFVVALVVTPASQAADIKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEMV 60
           MLKK+FLA+LGFVVAL   PASQAAD+KKVDVLLVGGGIMSTTLAVWLNELEPGWSMEM+
Sbjct: 1   MLKKTFLALLGFVVALATAPASQAADVKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEMI 60

Query: 61  ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGKVQIAKAIEINESFQISRQFWSWQ 120
           ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGK+QIAKAIEINE+FQISRQFWSWQ
Sbjct: 61  ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGKIQIAKAIEINEAFQISRQFWSWQ 120

Query: 121 VKNGVLKNPRSFINSTPHMSFIWGEDNVTFLKKRYQALQASPLFAGMQYSEDHEQIKKWV 180
           VK+GVLKNPRSFIN+TPHMSFIWG+DNVT+LKKRYQALQASPLFAGMQYSEDHEQIKKWV
Sbjct: 121 VKSGVLKNPRSFINTTPHMSFIWGDDNVTYLKKRYQALQASPLFAGMQYSEDHEQIKKWV 180

Query: 181 PLMMEGRDPNQKLAATWSPLGTDVNFGEITRQFAAYLQSRPNFALKLSSEVRDITRNADG 240
           PLMMEGRDP QKLAATW+PLGTDVNFGEITRQFAAYLQ+RPNFALKLSSEVRDITRNADG
Sbjct: 181 PLMMEGRDPQQKLAATWTPLGTDVNFGEITRQFAAYLQARPNFALKLSSEVRDITRNADG 240

Query: 241 TWRISYKNLKDGSLTETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDNP 300
           TWRI YKNLKDGS TETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDNP
Sbjct: 241 TWRIGYKNLKDGSTTETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDNP 300

Query: 301 AIAERHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS 360
           AIAERHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS
Sbjct: 301 AIAERHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS 360

Query: 361 ATTTHNVWPMARVGIDEYPLVEYLAGQLMLSDDQRFAALKEYFPNAKKEDWRLWQAGQRV 420
           ATTTHNVWPMARVGIDEYPLVEYLAGQLMLSDD+RFAALKEYFPNAKKEDWRLWQAGQRV
Sbjct: 361 ATTTHNVWPMARVGIDEYPLVEYLAGQLMLSDDERFAALKEYFPNAKKEDWRLWQAGQRV 420

Query: 421 QIIKRDDQKGGVLKLGTEIVASADGSMAGLLGASPGASTAAPIMLNVLQKVFKDKLATPE 480
           QIIKRDD KGGVLKLGTEIVASADGSMAGLLGASPGASTAAPIML+VLQKVFKDKLATPE
Sbjct: 421 QIIKRDDVKGGVLKLGTEIVASADGSMAGLLGASPGASTAAPIMLSVLQKVFKDKLATPE 480

Query: 481 WQQKVRQIVPSYGIKLNDHPDQVAKEWAYTAEVLQLAPPPVIAPKA-AKDAVNGSMEKPK 539
           WQQKVRQIVPSYG KLNDHPDQVAKEWAYT+EVLQLAPPPVIAPKA  KDA  GSMEKPK
Sbjct: 481 WQQKVRQIVPSYGTKLNDHPDQVAKEWAYTSEVLQLAPPPVIAPKATGKDAAKGSMEKPK 540

Query: 540 ANAAADMAL 548
           ANA+ADMAL
Sbjct: 541 ANASADMAL 549


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,692,709
Number of extensions: 70493
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 458
Effective length of database: 1,193,720
Effective search space: 546723760
Effective search space used: 546723760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)