BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4088.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309911|ref|YP_003774003.1| hypothetical protein Hsero_0576...   284   7e-78

>gi|300309911|ref|YP_003774003.1| hypothetical protein Hsero_0576
           [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  284 bits (726), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 138/247 (55%), Positives = 177/247 (71%), Gaps = 1/247 (0%)

Query: 25  SDPLRHADAISDRSDLQREEVRGGRFLLTSYVHARKRAPLLRVYIEGDGRAWITRSQHSL 84
           SDPL +ADA++  + L+RE  R G FLLT+YV   +    L +YIEGDG AW +R + S 
Sbjct: 37  SDPLANADAMTQAAGLRRELTRSGPFLLTAYVRISRLDQPLNLYIEGDGLAWRSRYEPSA 96

Query: 85  DPTPITAMGLRLAANDG-GDVVYLARPCQFTSMTRNPDCQPAYWTGLRYGSEVVTSMDEA 143
           DPTP  A+GL LAA D   ++VYLARPCQFT M  NP C   YWTG R+  EVV +M+EA
Sbjct: 97  DPTPRKALGLSLAAADNSANMVYLARPCQFTPMASNPACNVGYWTGKRFAPEVVAAMNEA 156

Query: 144 LSYYVARLQPDRLELVGYSGGGSIAVLLAARRKDVSAIRTVAGNLDHVAMNRWHEVSQMP 203
           + +Y+ R+   R+ LVGYSGGG+IAVL+AARR DV+ +RTVAGNLDHVA+NRWH+V+ M 
Sbjct: 157 VGHYLERVPGQRVNLVGYSGGGAIAVLIAARRNDVATVRTVAGNLDHVALNRWHKVTPMS 216

Query: 204 RSLNPIDFAAQVAHIPQLHVSGSEDKVIPTAITRTFVARAAPCAALKVVPGMKHESDWGA 263
            SLN ID A++VA I QLH SGS+D ++P    R FV +   CA L+V+PG+ HE DW A
Sbjct: 217 DSLNAIDVASRVAGIAQLHFSGSDDVIVPERFARAFVQQVGACAHLRVLPGLSHEGDWAA 276

Query: 264 LWPDLLQ 270
           +WP LL+
Sbjct: 277 IWPSLLR 283


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 948,073
Number of extensions: 39952
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)