BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4085.p (597 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 867 0.0 gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 458 e-130 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 435 e-123 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 426 e-120 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 259 4e-70 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/596 (74%), Positives = 506/596 (84%) Query: 1 MLTSIRARVVCAFVALVVFSVVVSTATNYLIARDSMWDATDSNLSTSVSDHARVIGDWVA 60 ML+S+RARV+CA + LV+ SV++STA NYLIAR + ATD +L+T+V HA VIGDW+A Sbjct: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 Query: 61 EKTHLVDSLQDVVLTDSPDAMLKQIQVAGGFYDVGVGYPDKKTKFTDWPNIPATYDPTSR 120 K+ ++ SL+D+ LT PDAMLKQIQVAGGFYDVGVGYPDK+ KFTDWPNIPATYDPT+R Sbjct: 61 GKSKMIASLEDISLTSDPDAMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 Query: 121 PWYKGAVQAGKPAAIPYISTSKLLLVALAIPVMREGTLKAVLVGDVALDSVVDTIKSIHP 180 PWYKG +QAGKP A+PY+STS LLLVALA PVMR+G LKAV+VGDVALDSVV+ IKSIHP Sbjct: 121 PWYKGVLQAGKPVALPYVSTSGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHP 180 Query: 181 TPESFGMLIDQNGRIIAHPNADLRFKQVTDIAPEFSQLISSAEGNTAAPMKIVVDGRTKL 240 TP SFGML++Q GRIIAHP+A LRFKQ +++APEFS L + G P+ IVVDGR KL Sbjct: 181 TPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGREKL 240 Query: 241 VRAQKIRGTDWSIVIAIDEAEAMAGARSLLNASLLALLLIVGIASMIGVAVTTKAFRRLG 300 VR Q + GTDW+IV+AID+ EA AG R+LL +SLL+L+ +V AS+IG AVT AFRRLG Sbjct: 241 VRVQAVPGTDWNIVVAIDQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRRLG 300 Query: 301 QVSQAMTAIGSGSGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTAS 360 Q+S AMTAIGSGSGDLTQRLPD G+DEVAII++SFN FV +LQ+VM DI +A E VR AS Sbjct: 301 QISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRVAS 360 Query: 361 NEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQGG 420 +EIA AN DLS RTESAAASLEQTAASMAEIS TV RS AA EADQRSS AT IASQGG Sbjct: 361 DEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQGG 420 Query: 421 KVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAH 480 KVVSDAV+TMGEIEKVS QIG IISVIDGIAFQTNILALNAAVE+ARAGEQGRGFAVVAH Sbjct: 421 KVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVVAH 480 Query: 481 EVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIAR 540 EVR+LAQRSA AAREVK+LVE T+SRV+AGS QVRQAG TM +IVT + DVQS I+ IAR Sbjct: 481 EVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTDDVQSAIADIAR 540 Query: 541 ATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRI 596 T EQTRGIQEVN+AV QLD MVQQNAALVE+SAAAS+TLQ QAN LA+TI RFRI Sbjct: 541 TTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRI 596 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 458 bits (1178), Expect = e-130, Method: Compositional matrix adjust. Identities = 271/602 (45%), Positives = 390/602 (64%), Gaps = 10/602 (1%) Query: 1 MLTSIRARVVCAFVALVVFSVVVSTATNYLIARDSMWDATDSNLSTSVSDHARVIGDWVA 60 M SI+AR++ + L++ S+ V ++ I + A + N + S I +WVA Sbjct: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 Query: 61 EKTHLVDSLQDVVLTDSPDAMLKQIQVAGGFYDVGVGYPDKKTKFTDWPNIPATYDPTSR 120 +T + + D VL P ++K +Q +GGFY +G DK + +PA YDPT+R Sbjct: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 Query: 121 PWYKGAVQAGKPAAI-PYIST-SKLLLVALAIPVMREGTLKAVLVGDVALDSVVDTIKSI 178 PWYK AV AGKP PY +K +V+ PVM+ G V+ + LD V D ++SI Sbjct: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 Query: 179 HPTPESFGMLIDQNGRIIAHPNADLRFKQVTDIAPEFSQLISSAEGNTAAPMKIVVDGRT 238 HPTP SF L+D++G ++AHP+ K + E + +A +++++G Sbjct: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA 240 Query: 239 KLVRAQKIRGTDWSIVIAIDEAEAMAG----ARSLLNASLLALLLIVGIASMIGVAVTTK 294 KLV+ I+GT+W++++A+D+A+ AG +RS L A +L L+ GI S+I TT Sbjct: 241 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLI----TTA 296 Query: 295 AFRRLGQVSQAMTAIGSGSGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASE 354 F+RL +V +AM + SG+GDLT RL + G DEV ISRSFN FV Q+ ++ D+ +S+ Sbjct: 297 VFQRLSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSD 356 Query: 355 AVRTASNEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATE 414 V+ +S EIAT NQDLS+RTE A +LE+TA++M E++ TV +++ A+ A++ + A++ Sbjct: 357 TVKISSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASK 416 Query: 415 IASQGGKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRG 474 IA+QGG+VV + VSTM I S QI II+VIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 417 IAAQGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRG 476 Query: 475 FAVVAHEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSL 534 FAVVA EVRSLAQRSA+AA+E+K L++++VS+V+ G V V QAG+TM +IV DV + Sbjct: 477 FAVVASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVI 536 Query: 535 ISGIARATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRF 594 +S IA A+ EQ GIQEVN A+T +D QQNAALVEQ+AAA+ +LQ +A+ L+ +G F Sbjct: 537 VSEIAHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGF 596 Query: 595 RI 596 ++ Sbjct: 597 KM 598 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 435 bits (1119), Expect = e-123, Method: Compositional matrix adjust. Identities = 272/601 (45%), Positives = 378/601 (62%), Gaps = 13/601 (2%) Query: 1 MLTSIRARVVCAFVALVVFSVVVSTATNYLIARDSMWDATDSNLSTSVSDHARVIGDWVA 60 ML+S+RAR++ V +V ++++ +A N R +A S HA I +WV Sbjct: 1 MLSSLRARLIFICVLIVALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVR 60 Query: 61 EKTHLVDSLQDVVLTDSPDAMLKQIQVAGGFYDVGVGYPDKKTKFTDWPNIPATYDPTSR 120 K + +++ + ++ Q AG F D +GYPDK+ +PA YDPT+R Sbjct: 61 SKRVVTGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKR--MLALHPMPAGYDPTAR 118 Query: 121 PWYKGAVQAGKPA-AIPYI-STSKLLLVALAIPVMREGTLKAVLVGDVALDSVVDTIKSI 178 PWYK AV+AGKP PY+ +T+ L+V A PV + L+AVL DV LD+VV T+ I Sbjct: 119 PWYKQAVEAGKPVLTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGI 178 Query: 179 HPTPESFGMLIDQNGRIIAHPNADLRFKQVTDIAPEFS--QLISSAEGNTAAPMKIVVDG 236 PTP SF ++ ++G II HPN +L K V+ + S L +G +A + G Sbjct: 179 KPTPSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLSAQSLAGMKQGGSA-----TIGG 233 Query: 237 RTKLVRAQKIRGTDWSIVIAIDEAEAMAGARSLLNAS-LLALLLIVGIASMIGVAVTTKA 295 L+ Q I TDWS+V+A+D EA +L+ S +LA+L IV A ++ +T + Sbjct: 234 IRYLLFTQPIANTDWSLVVALDYREATHAIGALMTLSTVLAVLAIVASAILLSYTIT-RL 292 Query: 296 FRRLGQVSQAMTAIGSGSGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEA 355 RRLG V AM I SG GDLT+RL GKDE+A ISR+FN F ++ +LDI ASE+ Sbjct: 293 LRRLGVVRNAMEEIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASES 352 Query: 356 VRTASNEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEI 415 V+ +S+EIA+ N DLS+RTE A SLE+TA++M E++ TV ++ A++A+Q + +A+++ Sbjct: 353 VKVSSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDV 412 Query: 416 ASQGGKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 475 A GG+VV V+TM I + S +I IISVIDGIAFQTNILALNAAVEAARAGEQGRGF Sbjct: 413 AVHGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 472 Query: 476 AVVAHEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLI 535 AVVA EVRSLAQRSA AA+E+K L++ +V +V GS V QAG TM E+V+ V ++ Sbjct: 473 AVVASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIV 532 Query: 536 SGIARATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFR 595 I+ A+ EQ+ GI EV AV Q+D QQNAALVEQ+AAA+ +LQ QA LA+ + F+ Sbjct: 533 GEISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFK 592 Query: 596 I 596 + Sbjct: 593 L 593 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 426 bits (1095), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/597 (42%), Positives = 362/597 (60%), Gaps = 3/597 (0%) Query: 3 TSIRARVVCAFVALVVFSVVVSTATNYLIARDSMWDATDSNLSTSVSDHARVIGDWVAEK 62 TS+R R++ +VV +++ TN+L AR D+ ++ A I +W K Sbjct: 23 TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 82 Query: 63 THLVDSLQDVVLTDSPDAMLKQIQVAGGFYDVGVGYPDKKTKFTDWPNIPATYDPTSRPW 122 +V S+++ P +K Q AGGF +GY DK F+ + YDPT RPW Sbjct: 83 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 142 Query: 123 YKGAVQAGKPA-AIPYISTSK-LLLVALAIPVMREGTLKAVLVGDVALDSVVDTIKSIHP 180 Y+ A + +P PY S S LLV A V ++G + AV DV LD+VV + +I P Sbjct: 143 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 202 Query: 181 TPESFGMLIDQNGRIIAHPNADLRFKQVTDIAPEFSQLISSAEGNTAAPMKIVVDGRTKL 240 TP S+ L D +G+IIAHPN LR K + D+ + T + +DGR ++ Sbjct: 203 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQM 262 Query: 241 VRAQKIRGTDWSIVIAIDEAEAMAGARSLLNASLLALLLIVGIASMIGVAVTTKAFRRLG 300 + ++ GTDW +V+A+D A+A+A ++L +S + +L+ +A+++ A+ ++ RL Sbjct: 263 LFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLT 322 Query: 301 QVSQAMTAIGSGSGDLTQRLPDQGK-DEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTA 359 V A+ I G GDLT+RL G+ DE+ I +FN+FV ++++VM+DI +AS + A Sbjct: 323 VVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAA 382 Query: 360 SNEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQG 419 S +IA+ N DLS RTES A+SLEQTAA+M +++ +V + A +A+Q S +A++IA+QG Sbjct: 383 SRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQG 442 Query: 420 GKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 479 G +V V TM I S +I IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 443 GTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 502 Query: 480 HEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIA 539 EVRSLAQRSA AA+E+K L+ +V +V AG V QAG T+ +V V +++ I Sbjct: 503 SEVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEIT 562 Query: 540 RATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRI 596 A+ EQ++GI + N AV +D QQNAALVEQ+AA + +LQ QA LA + FR+ Sbjct: 563 AASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRL 619 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 259 bits (662), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 160/316 (50%), Positives = 222/316 (70%), Gaps = 2/316 (0%) Query: 281 VGIASMIGVAVTTKAFRRLGQVSQAMTAIGSGSGDLTQRLPDQGKDEVAIISRSFNQFVG 340 V IAS++ V T R L + Q + G DLT R+ G+DE + + Sbjct: 201 VLIASLLAFLVATNVSRPLKEAVQIAQRVARG--DLTLRIRPAGRDETGALMEALRAMNE 258 Query: 341 QLQNVMLDIHEASEAVRTASNEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTA 400 L++++ ++ + ++ + TAS+EIA N DLS+RTE A SLE+TA++M E++ TV ++ Sbjct: 259 SLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAMEELTSTVTQNAD 318 Query: 401 AAQEADQRSSTATEIASQGGKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALN 460 A++A+Q ++TA++IASQGG+VV V TM I + S +I IISVIDGIAFQTNILALN Sbjct: 319 NARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDGIAFQTNILALN 378 Query: 461 AAVEAARAGEQGRGFAVVAHEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKT 520 AAVEAARAGEQGRGFAVVA EVRSLAQRSA AA+E+KEL++ +V +VSAGS V +AG T Sbjct: 379 AAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSALVERAGST 438 Query: 521 MGEIVTQSADVQSLISGIARATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATL 580 M E+V V +++ I+ AT EQ+ GI EVN A+TQ+D QQNAALVEQ+AAA+ +L Sbjct: 439 MTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALVEQAAAAADSL 498 Query: 581 QTQANTLASTIGRFRI 596 + QA+ LA+ +G+F++ Sbjct: 499 KGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,423,111 Number of extensions: 54187 Number of successful extensions: 534 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 342 Number of HSP's successfully gapped: 71 Length of query: 597 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 506 Effective length of database: 1,188,985 Effective search space: 601626410 Effective search space used: 601626410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)