BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4079.p
         (279 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...   288   3e-79
gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate uridyly...   249   1e-67

>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  288 bits (738), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 139/276 (50%), Positives = 195/276 (70%), Gaps = 4/276 (1%)

Query: 1   MKPLRKAIFPVAGLGTRLLPATKSIPKEMLTIVDRPLIHYAVSEAIEAGIEVLIFVTSRG 60
           +K ++KA+FPVAGLG+R LPATK+ PKEML IVD+PLIHYAV EA+ AGI  ++F+T R 
Sbjct: 3   IKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGRN 62

Query: 61  KRAIADYFDYHPELEAELQAKGKLEVLASVRNIIPPHVSCVFIHQARPLGLGHAVLCAAE 120
           KRAI D+FD   ELE+EL+A GK ++L  V+N++P  V+C+FI Q+ PLGLGHAVLCA  
Sbjct: 63  KRAIEDHFDKAYELESELEAAGKKKLLEIVQNVVPKSVNCIFIRQSVPLGLGHAVLCARP 122

Query: 121 MIDDEPFAVLLPDDLIDGTSQG---ALAQLAQLHRQTSASVLAIEEVPRDKVHQYGIIAS 177
           ++ +EPFAVLL DD +D T  G    LAQ+ +++ +   S+LA++EVP+    QYGI+++
Sbjct: 123 VVGEEPFAVLLADDFMD-TDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSA 181

Query: 178 STSQAGAAVIDAIVEKPSPATAPSNWSVVGRYILPPQVMRALATQAPSVGGEIQLTDAIA 237
           +  Q     ++AIVEKP+P  APS  +VVGRY+L  ++   L       GGEIQLTD IA
Sbjct: 182 TPYQPNLERVNAIVEKPAPEEAPSTLAVVGRYVLNNRIFDYLENIGRGAGGEIQLTDGIA 241

Query: 238 SCLPAEKFLGHPLHGRRFDCGNKEGFIEANLHFSLK 273
             + AE  L +   G+R+DCG+K G+++A +   +K
Sbjct: 242 KLMQAESVLAYRYQGQRYDCGSKLGYLKATVAMGMK 277


>gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  249 bits (637), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/247 (47%), Positives = 168/247 (68%), Gaps = 2/247 (0%)

Query: 29  MLTIVDRPLIHYAVSEAIEAGIEVLIFVTSRGKRAIADYFDYHPELEAELQAKGKLEVLA 88
           ML IVD+PLI YAV EA+EAGI  +IF+T R KRAI D+FD   ELE+EL+A GK+++L 
Sbjct: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60

Query: 89  SVRNIIPPHVSCVFIHQARPLGLGHAVLCAAEMIDDEPFAVLLPDDL--IDGTSQGALAQ 146
           ++R+++P H++CV++ QA PLGLGHAVL A  ++ DEPFAVLL DD   +D   +  +AQ
Sbjct: 61  TIRHVVPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDVDAGQKNVMAQ 120

Query: 147 LAQLHRQTSASVLAIEEVPRDKVHQYGIIASSTSQAGAAVIDAIVEKPSPATAPSNWSVV 206
           +  +  +   S+LA+++VPR +  QYGI++ S       ++  IVEKP+P  APS  +VV
Sbjct: 121 MTAMFEREGKSLLAVQDVPRPETRQYGIVSGSAYADRLELMSGIVEKPAPEEAPSTLAVV 180

Query: 207 GRYILPPQVMRALATQAPSVGGEIQLTDAIASCLPAEKFLGHPLHGRRFDCGNKEGFIEA 266
           GRY+L P +   L       GGEIQLTDAI++ L  E+ L +   G+RFDCG+K G+++A
Sbjct: 181 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 240

Query: 267 NLHFSLK 273
            +    K
Sbjct: 241 AVAMGFK 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 897,024
Number of extensions: 38052
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,222,130
Effective search space: 238315350
Effective search space used: 238315350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)