BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4075.p (216 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 77 1e-15 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 68 5e-13 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 66 3e-12 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 65 4e-12 gi|300309874|ref|YP_003773966.1| nitrate/sulfonate/bicarbonate A... 65 4e-12 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 77.0 bits (188), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 26/207 (12%) Query: 20 ILDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSSGSIVRRMNISWPLAFGGA-- 77 ILD + T+QRG VG++G +G+GK+TL R + G+ P+ GSI P G Sbjct: 331 ILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQLDGETLSPTLEGRTRE 390 Query: 78 --------FQGSLSGLDNFRFICRIY-----------GLSHHDRLAQVEDFAELGHYL-- 116 FQ + + L+ I RI G + R A++ D +L + Sbjct: 391 QFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGLKGEAMRRRTAELLDLVQLPATVID 450 Query: 117 REPVKTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDARFQTKCRHELFEKRRDR--SF 174 R P + S G + R+ A ++A + D L DEV + D L E RR+ S+ Sbjct: 451 RLPAE-LSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAAILELLAELRRELQVSY 509 Query: 175 VIVSHEVHNIRDYCERVLVLHDRKLLA 201 + +SH++ +R C+ ++VL+ +++A Sbjct: 510 MFISHDISTVRAICDDIVVLYAGRMVA 536 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 28/227 (12%) Query: 1 MIKLNQVSKSYFTRHGERLILDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSSG 60 MI++ V++ R G + V+ ++++GE G++GR+GAGKSTL+R L + P+SG Sbjct: 1 MIEIQAVTQ----RFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSG 56 Query: 61 SIVRRMNISWPLA----------FGGAFQ-----GSLSGLDNFRFICRIYGLSHHDRLAQ 105 IV L+ G FQ S S DN + G S + A+ Sbjct: 57 RIVLDGQDLTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAK 116 Query: 106 VEDFAELGHYL----REPVKTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDARFQTKC 161 VE EL R P + S G + R+ A ++A + L DE + D T+ Sbjct: 117 VEPLLELVGLTALRDRYPAQ-ISGGQKQRVGIARALANDPKVLLSDEATSALDPE-TTRS 174 Query: 162 RHELFEKRRDR---SFVIVSHEVHNIRDYCERVLVLHDRKLLAFSEV 205 EL K + V+++H++ I+ C+RV V+ +++ EV Sbjct: 175 ILELLRKINKELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEV 221 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 65.9 bits (159), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 24/231 (10%) Query: 2 IKLNQVSKSYFTRHGERLILDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSSGS 61 I L V K + GE + +++ V+ G+ +LG +G GKST +RL+ G++ PSSGS Sbjct: 4 ISLQGVCKHW----GEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGS 59 Query: 62 --IVRRMNISWPLA---FGGAFQG-----SLSGLDNFRFICRIYG---LSHHDRLAQVED 108 I R P A FQ LS DN F R+ + RL +V D Sbjct: 60 IHIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVAD 119 Query: 109 FAELGHYLREPVKTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDARFQTKCRHEL--F 166 L H L S G + R+A ++ + L+DE ++ DA+ + + R E+ Sbjct: 120 ILGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRAL 179 Query: 167 EKRRDRSFVIVSHEVHNIRDYCERVLVLHDRKLLAFSEVDAA-IDFYQEHC 216 +++ + + V V+H+ ++V++L + ++ E DAA D Y + Sbjct: 180 QQQLNMTMVYVTHDQTEAMSMADQVILLREGRI----EQDAAPADLYAQPA 226 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 65.1 bits (157), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 13/177 (7%) Query: 2 IKLNQVSKSYFTRHGERLILDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSSGS 61 I L QV K+Y ++ ++A + GE + ++G +G GKSTL+R++ G+E SSG Sbjct: 4 IHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSGQ 63 Query: 62 IV---RRMNISWP------LAFGG-AFQGSLSGLDNFRFICRIYGLSHHDRLAQVEDFA- 110 IV R +N P + F A ++ N + +I GLS + A+V+ A Sbjct: 64 IVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRAAA 123 Query: 111 --ELGHYLREPVKTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDARFQTKCRHEL 165 ELG L + S G R R+A ++ + FL DE ++ DA+ + + R E+ Sbjct: 124 ILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 >gi|300309874|ref|YP_003773966.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 447 Score = 65.1 bits (157), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 16/212 (7%) Query: 3 KLNQVSKSYFTRHGERL-ILDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSSGS 61 +L VSKSY T G L +LD+++ V GE + +LG++G+GKST++R L G+ PSSG Sbjct: 14 ELCAVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGH 73 Query: 62 IVRR------MNISWPLAFGG-AFQGSLSGLDNFRFICRIYGLSHHDRLAQVEDFAE--- 111 + +N + F A L+ N + + +R A V+ E Sbjct: 74 TMAAGKPLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVDRAIELIG 133 Query: 112 LGHYLREPVKTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDARFQTKCRHELFEKRRD 171 LG+Y + S GMR R+ A ++ + +DE + D R EL R Sbjct: 134 LGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWRA 193 Query: 172 R-----SFVIVSHEVHNIRDYCERVLVLHDRK 198 S +V+H + + R++V+ R Sbjct: 194 PDSGLTSIFMVTHNIEEAVEMATRIVVVFPRP 225 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 652,736 Number of extensions: 27643 Number of successful extensions: 374 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 359 Number of HSP's successfully gapped: 28 Length of query: 216 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 135 Effective length of database: 1,236,335 Effective search space: 166905225 Effective search space used: 166905225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)