BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4072.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311764|ref|YP_003775856.1| 8-amino-7-oxononanoate (7-keto-...   166   3e-42
gi|300311274|ref|YP_003775366.1| 5-aminolevulinic acid synthase ...   127   2e-30

>gi|300311764|ref|YP_003775856.1| 8-amino-7-oxononanoate
           (7-keto-8-aminopelargonate) synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 385

 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 189/361 (52%), Gaps = 14/361 (3%)

Query: 26  GAVTQINGKEYINFSSYNYLGLAGDAQVNRAAKEAIDRYGTSASASRLVAGERPIQRELE 85
           G +  +  + Y++F S +YLGLA    +  AA  A+ +YG  A+AS L++G       LE
Sbjct: 28  GPLLTVEARPYLSFCSNDYLGLANHPAITAAAVTALGQYGMGAAASALISGHSAAHETLE 87

Query: 86  QALAQHYQVQDCLVFVSGHATNVTTIGQLFGPRDLVIHDSLIHKSVLDGIKLSGAARRSF 145
           +ALA+   +   L F SG+  N+  IG L G  D V+ D L H S++DG +LSGA+ + F
Sbjct: 88  RALAEFTGLPAALGFGSGYMANMGVIGALVGAGDTVVVDRLSHASLIDGARLSGASLKVF 147

Query: 146 AHNDMAALERILEEVRNSFELVLIVVEGHYSMDGDIPDLPALIRIKQRHACLLMVDEAHS 205
            HND   L+ +L    +  +LV  V +  +SMDGD   L  L  I  RH   L+VD+AH 
Sbjct: 148 PHNDTQRLDHVLARCGSGRKLV--VTDAVFSMDGDQAPLSELAEICARHGAWLLVDDAHG 205

Query: 206 LGVLGTTGKGLHEHFGLPGSEVDIWMGTLSKTLAGCGGYIAGSTALVEHLKYAASGFVYS 265
            GVLG  G+G   H G+    V + MGTL K     G ++AG   L+  +   A  +++S
Sbjct: 206 FGVLGPQGRGSLAHAGVRAPHV-LCMGTLGKAAGVAGAFVAGERDLLAWIMQRARTYMFS 264

Query: 266 VGIAPALAAASLTALHLMTTQSERTASLRHNAGLLLETARQAGLDTGSSLGL-----SII 320
               PALAAA+  +L ++     R   LR     L+   R+ GL  G S  L      I 
Sbjct: 265 TAHPPALAAAATASLAVIAADEWRRTHLR----ALVAQLRK-GL-AGLSWQLLPSQTPIQ 318

Query: 321 PIITGSSTKAVRLSNQLHQRAINVQPIIYPAVEEKTARLRLFVSAQHTRQQICHTIAVIK 380
           P+I G + +A  L  QL ++ I V  I  P V   TARLR+ +SA HT++Q+   I  + 
Sbjct: 319 PLIIGDNARARALMQQLREQGIWVPAICPPTVPRMTARLRISLSALHTQEQVAQLIEALV 378

Query: 381 E 381
           +
Sbjct: 379 Q 379


>gi|300311274|ref|YP_003775366.1| 5-aminolevulinic acid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 173/389 (44%), Gaps = 40/389 (10%)

Query: 19  ITHQGVAGAVTQINGKEYINFSSYNYLGLAGDAQVNRAAKEAIDRYGTSASASRLVAGER 78
           +  QG++GA    NG+ Y+NFS  NYLG   DA+V  A  E+  RYG S   SR   G  
Sbjct: 29  VIMQGMSGAEVSRNGRSYVNFSGINYLGWQQDARVLDAFVESARRYGLSTGGSRATQGIC 88

Query: 79  PIQRELEQALAQHYQVQDCLVFVSGHATNVTTIGQL---FG--------PRDLV-IHDSL 126
                LE  L+  +  +  L F SG   N+  I  +   FG         RD V I D  
Sbjct: 89  EPHLRLENMLSTLHGKERTLSFASGMLANIGFINAMTAKFGFSSRSAIDNRDAVLIFDRE 148

Query: 127 IHKSVLDG---IKLSGAARRSFAHNDMAALERILEEVRNSFELVLIVVEGHYSMDGDIPD 183
            H S+      +K  G +  +F HND+  L  +L ++       ++V E  YS DG +  
Sbjct: 149 CHWSLWKAASHLKF-GESLLAFKHNDVTDLTAVLAKLGG--RKAIVVFESLYSSDGSVAP 205

Query: 184 LPALIRIKQRHACLLMVDEAHSLGVLGTTGKGLHEHFGLPGSEVDIWMGTLSKTLAGCGG 243
           +  ++ + QR   L  +D+A+   V G+  +  HE F       D  M +LSK++   GG
Sbjct: 206 IGEILDVCQRFDALSYIDDANGFMVYGSPQRPFHEQF-RHMRRADFIMVSLSKSVGLEGG 264

Query: 244 YIAGSTALVEHLKYAASGFVYSVGIAPALAAASLTALH-------LMTTQSERTASLR-- 294
            I+GS   ++  +  +   +++  I P  A  ++  +        +M    +R+A  R  
Sbjct: 265 AISGSAEFIDAFEVLSGTSIFTAAIQPPTADLAVFIIERLRANPWIMEDYLDRSAMFRLK 324

Query: 295 -HNAGLLLETARQAGLDTGSSLGLSIIPIITGSSTKAVRLSNQLHQRAINVQPIIYPAVE 353
              +GL L        DT S     I  ++ G   KA ++   L Q+   V    YPAV+
Sbjct: 325 LQASGLRLN-------DTAS----YITSVMIGRDDKAEQVRQALEQQGFCVPIFRYPAVK 373

Query: 354 EKTARLRLFVSAQHTRQQICHTIAVIKEL 382
              A +RL +   HT  QI   +A +K+L
Sbjct: 374 PNQALMRLILHRLHTEPQIDRFVASLKDL 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,055,732
Number of extensions: 41610
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)