BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4071.p (2537 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [H... 119 3e-27 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 115 6e-26 gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H... 112 3e-25 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 98 7e-21 gi|300312794|ref|YP_003776886.1| NADPH:quinone oxidoreductase [H... 80 2e-15 >gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 324 Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 112/219 (51%), Gaps = 8/219 (3%) Query: 1808 GPEEVEVAVQATGLNFRDIMYLMGLLPDEAVEAGFGGASLGLEFSGVVSRVGRSVTAFEP 1867 G EV + A GLNF D + GL P + + AG LG E +G + VG V+ F+ Sbjct: 27 GAGEVRIRHAAVGLNFIDCYFRAGLYP-QPLPAG-----LGQEAAGTIEAVGAGVSGFKV 80 Query: 1868 GDKVIGFG--SACFASHVVTRCEALALMPGQWSFEAAATVPTVFFTTYYALKELANLQPG 1925 GD+V G + +A V + L +P SF+ AA + T Y L++ +QPG Sbjct: 81 GDRVAYAGRPNGAYAEERVMPADILVKLPDAISFDTAAAMMLQGMTVQYLLRQTYAVQPG 140 Query: 1926 ERVLIHGAAGGIGLAAIQLAKLLGAEIFATAGSEEKRDFVRLLGVDHVFDSRNLDYVERI 1985 + +L H AAGGIGL A Q A+ LG + T S+EK G HV + + ++VER+ Sbjct: 141 DTILFHAAAGGIGLIACQWARALGVNLIGTVSSDEKAALALQHGAAHVINYKTENFVERV 200 Query: 1986 MEHTSGQGVDVILNSLAGEAIRRNLSVLKPFGRFLELGK 2024 E T G+GV V+ +S+ + +L L+P G + G Sbjct: 201 KELTGGRGVQVVYDSIGKDTFLGSLDCLRPRGMMVSFGN 239 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 115 bits (287), Expect = 6e-26, Method: Composition-based stats. Identities = 117/443 (26%), Positives = 197/443 (44%), Gaps = 52/443 (11%) Query: 23 KDQERQAIAIIGLAFRFP--GDLADEDSLWSALSEGRD---MVTHLPAERFATDELAHPE 77 + +ER+ + I GL P ++AD WSA+ EG+ VT A F T Sbjct: 3 RTRERRVV-ITGLGCISPVGNNVADT---WSAIKEGKSGIATVTKFDATPFTTH------ 52 Query: 78 RPEAGRSVNFSAGVLSGIDQFDAAFFGISPREAAWLDPQQRLLLELSWEAMENAGKPPSS 137 AG + G + D I +EA +D + +AM+++G + Sbjct: 53 ----------FAGEVKGFNIEDY----IPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTD 98 Query: 138 LAGTDCAVYVG--ISSLDYGTRGLDDLAS-----LSAHTMTGNTLSLAANRLSYFFDLRG 190 V +G I L +L + +S + + +++ + LS F L+G Sbjct: 99 ENAERIGVMIGSGIGGLPLIEETHAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKG 158 Query: 191 PSLAVDTACSSSLFALHHACRCLQHGEAKVALVGGVNLLLHPYPFVGFTKASMLSADG-- 248 P+LA+ TAC++ L + A R + +G+A V + GG + P GF A LS Sbjct: 159 PNLAIVTACTTGLHCIGSAARMIMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDD 218 Query: 249 ---RCKVFDAAGNGYVRAEGGAVLLLKPLRQAQRDGDCIHAVILASGINSDGKRKTGITI 305 + +D +G+V EG V++L+ A+ G I+A +L G++ D +T Sbjct: 219 PATASRPWDKDRDGFVLGEGAGVMVLEEYEHAKARGAKIYAELLGFGMSGDAYH---MTA 275 Query: 306 PSQAGQAELMRSVLKQSGLRGADIDFIEAHGTGTMVGDPVEAAAIGEVYGGQRAAPLPIG 365 P+ G + + L+ +G+ ++ ++ AHGT T +GD E+ AI + G A + + Sbjct: 276 PNLDGPRRCVLNALRDAGVNPDEVQYLNAHGTSTPLGDKNESDAIKAAF-GDHAYKMVVN 334 Query: 366 SIKANLGHLEAASGMASLVKTVLALKRRALPPQIQLHEPHPSIDLEALNLRCHTSPFPLS 425 S K+ GHL +G V TVLA+ + PP + + P DL+ C + Sbjct: 335 STKSMTGHLLGGAGGLETVLTVLAVHNQVSPPTMNIFNQDPECDLD----YCANQARDMK 390 Query: 426 KEGPLLAGVNSFGFGGANAHVLL 448 + +A NSFGFGG N +++ Sbjct: 391 ID---IAVKNSFGFGGTNGTLVI 410 >gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 325 Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/320 (30%), Positives = 154/320 (48%), Gaps = 24/320 (7%) Query: 1800 RPNPTTDMGPEEVEVAVQATGLNFRDIMYLMGLLPDEAVEAGFGGASL-GLEFSGVVSRV 1858 RP P G EV + V A G+N D+ G P G + L GLE +G + Sbjct: 20 RPVPELKAG--EVLIKVHAAGVNRPDVFQRTGNYPVPP-----GASDLPGLEVAGEIVAG 72 Query: 1859 GRSVTAFEPGDKVI----GFGSACFASHVVTRCEALALMPGQWSFEAAATVPTVFFTTYY 1914 + F+ GD V G G A F + + +C L + G + EAAA +P +FT + Sbjct: 73 DLGDSGFKLGDLVCALVQGGGYAEFCAAPLAQC--LPVPKGLSALEAAA-LPENYFTVWS 129 Query: 1915 ALKELANLQPGERVLIHGAAGGIGLAAIQLAKLLGAEIFATAGSEEKRDFVRLLGVDHVF 1974 + + L E +L+ G + GIG+ AIQ+A+ LG +FATAGS EK LG + Sbjct: 130 NVFDRGQLSGEETLLVQGGSSGIGVTAIQIARALGHRVFATAGSAEKCRACEELGAERAI 189 Query: 1975 DSRNLDYVERIMEHTSGQGVDVILNSLAGEAIRRNLSVLKPFGRFLELGKRDFFENTRIG 2034 + + D+ + E T G+GVDVIL+ + G+ + R + L GR + + + + Sbjct: 190 NYKTEDFEAVVKELTGGRGVDVILDMVGGDYLPREIKALADDGRLVFIAQLGGAKGQLDM 249 Query: 2035 LRPFKDNISYFGIDADQLLTRRP-----DLAARLLKEVMALFQDGHLFPLPYRAFPAERV 2089 + + ++ G L RP +AA+L + V L + G + P+ + FP E+ Sbjct: 250 GQVMRRRLTITG----STLRPRPVAFKAAIAAKLREHVWPLIEAGKIRPVIHHRFPLEQA 305 Query: 2090 EEAFRFMQQAKHIGKVVVSL 2109 +A M+ + HIGK+++ L Sbjct: 306 AQAHAMMEGSTHIGKIMLEL 325 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 78/278 (28%), Positives = 118/278 (42%), Gaps = 23/278 (8%) Query: 181 RLSYFFDLRGPSLAVDTACSSSLFALHHACRCLQHGEAKVALVGGVNLLLHPYPFVGFTK 240 + FF + G + +AC+S + +A ++ G + GG L V T Sbjct: 152 NMGVFFGITGRIITTSSACTSGSQGIGYAYETIRSGRQLAMVAGGAEELCATEAAVFDTL 211 Query: 241 ASMLSADGRCKV----FDAAGNGYVRAEGGAVLLLKPLRQAQRDGDCIHAVILASGINSD 296 + + +V FD +G V EG L+L+ L AQ G IHA I+ G NSD Sbjct: 212 YATSVRNDTPQVTPSPFDRDRDGLVLGEGAGSLILEDLEHAQARGAHIHAEIVGFGTNSD 271 Query: 297 GKRKTGITIPSQAGQAELMRSVLKQSGLRGADIDFIEAHGTGTMVGDPVEAAAIGEVYGG 356 G +T P+ A ++ L +GL + I +I AHGTGT GD E A V+G Sbjct: 272 GAH---VTNPNAATMQAAIQMALDDAGLPASAIGYINAHGTGTRQGDVAETQATARVFG- 327 Query: 357 QRAAPLPIGSIKANLGHLEAASGMASLVKTVLALKRRALPPQIQLHEPHP---SIDLEAL 413 PI S+K+ +GH A G ++ ++ P I L P P +D Sbjct: 328 ---KATPISSLKSYMGHTLGACGALEAWLSIEMMRHGWFAPTINLQHPDPDCGELDYLTG 384 Query: 414 NLRCHTSPFPLSKEGPLLAGVNSFGFGGANAHVLLREY 451 N R + +S N+F FGG N ++ + + Sbjct: 385 NGRALECEYVMS---------NNFAFGGINTSLIFKRW 413 >gi|300312794|ref|YP_003776886.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 342 Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 118/284 (41%), Gaps = 35/284 (12%) Query: 1797 LAWRPNPTTDMGPEEVEVAVQATGLNFRDIMYLMG--LLPDEAVEAGFGGASLGLEFSGV 1854 L + P ++ P EV V V A GLN D G +LP E LG + SGV Sbjct: 20 LRYEDAPVPELQPGEVLVRVHAVGLNPPDWYLREGYKMLPPEWQPTVAFPLILGTDISGV 79 Query: 1855 VSRVGRSVTAFEPGDKVIGF---------GSACFASHVVTRCEALALMPGQWSFEAAATV 1905 V V V F GD+V GS +A +V +AL P + S AA Sbjct: 80 VEAVADDVKDFAVGDEVYSMVRFPSGLAGGSRAYAQYVSVAASEIALKPQRISHAQAAAA 139 Query: 1906 PTVFFTTYYALKELAN-----LQP---------GERVLIHGAAGGIGLAAIQLAKLLGAE 1951 P T + + EL + LQP + V+++GAAGG+G A+QLAK GA Sbjct: 140 PMSLLTAWQFMIELGHDIQNPLQPHRHEPVPLKDKTVVVNGAAGGVGHFALQLAKWKGAR 199 Query: 1952 IFATAGSEEKRDFVRLLGVDHVFDSRNLDYVERIMEHTSGQGVDVILNSLAGEAIRRNLS 2011 + A GS F+R LG D +DY E VD++++++ G A R L Sbjct: 200 VIAI-GSGGHEAFLRDLGADEF-----IDYTRSAAEDVLSD-VDLVIDAVGGPASGRFLR 252 Query: 2012 VLKPFGRF---LELGKRDFFENTRIGLRPFKDNISYFGIDADQL 2052 LK G LG E R+G+ + G QL Sbjct: 253 TLKRGGALFPIFPLGFSGAEEAARLGVNVSTTQVRSSGAQLQQL 296 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 8,103,831 Number of extensions: 351011 Number of successful extensions: 1202 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 1194 Number of HSP's successfully gapped: 12 Length of query: 2537 Length of database: 1,619,870 Length adjustment: 101 Effective length of query: 2436 Effective length of database: 1,141,635 Effective search space: 2781022860 Effective search space used: 2781022860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 139 (58.2 bits)