BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4067.p
         (287 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311667|ref|YP_003775759.1| hypothetical protein Hsero_2352...   105   5e-24

>gi|300311667|ref|YP_003775759.1| hypothetical protein Hsero_2352
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score =  105 bits (262), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 27/228 (11%)

Query: 72  RGEGDH-ERARIVAARRAKTKVRRLAKMLQADCLLTLTYRECVTDYARVEADFKAFRERL 130
           RGE ++ ER    A R AK +VR+  K + AD ++TLTYR+ + D       +  FR R+
Sbjct: 29  RGESENRERNDETAGRAAKKRVRQACKTIGADRMITLTYRQNMIDRDTALKHWGRFRRRM 88

Query: 131 RSVGDFHYVATLEVQKRGALHVHIACQQFPAWLQNEHGVRVRSWNLIRSMWRRVVGKDNG 190
                F YVA +E Q+RGA+H H+            HG   + ++L+R +W +VVGKD  
Sbjct: 89  GKHRQFLYVAVIEEQERGAIHFHV----------TVHG--RQRYHLLRGIWAQVVGKDGA 136

Query: 191 -----NVNFTRPR----GRNSAHRIASYISKYVSKNLEEARFNKKSYWASRGIPKP--SQ 239
                N++   P     G++  H++A+YI+KY +K++     N+K Y+  RGIPKP  + 
Sbjct: 137 GRSMSNIDVRNPPKFGFGKDGVHKLAAYIAKYCTKDMPCRTLNQKRYFCFRGIPKPEVTA 196

Query: 240 YKIYFKADTDSFDIVVLVAQEFSMRGFDDIAQYHDRLNSFYWFSASKS 287
           + +      D+     L+A+   M G   +  ++ +  S  W +    
Sbjct: 197 WPLACTQAVDAVRTAFLIAEGGCMEG---VQYWYKKRLSVMWIATPPC 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 803,715
Number of extensions: 29788
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,222,130
Effective search space: 248092390
Effective search space used: 248092390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)