BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4059.p
         (410 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol hy...   736   0.0  
gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol hy...    96   5e-21

>gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/410 (93%), Positives = 395/410 (96%)

Query: 1   MNTNAHPHSSSPAAAGTDICIVGDGAVGKTAALGLAQAGFKVMVLAPPPKDSAPDPASWD 60
           M T+AHP+SSS A AGTDICIVGDGAVGKTAALGLAQAGFKV +LAPPPK + PD ASWD
Sbjct: 1   MTTHAHPNSSSSAGAGTDICIVGDGAVGKTAALGLAQAGFKVTLLAPPPKAAPPDTASWD 60

Query: 61  VRVYALNHTAHRLLSSVRVWDAMDTARITPVDNMTVHGDGVPEKARPGLLSFDAYAARTD 120
           VRVYALNHTA RLLSSVRVWDAM+  RI  VDNMTVHGDGVP+KARPGLLSFDAYAARTD
Sbjct: 61  VRVYALNHTAQRLLSSVRVWDAMEGERIAAVDNMTVHGDGVPDKARPGLLSFDAYAARTD 120

Query: 121 ALAWIVEGRNLDQALDAALRFAPNVRVVQGRATALTVAGETATLTLESGQSLSASLVIGA 180
           ALAWIVE RNLDQALDAALRFAPN+RVVQGRATAL V GETATLTLESGQSLSASLVIGA
Sbjct: 121 ALAWIVEDRNLDQALDAALRFAPNIRVVQGRATALAVLGETATLTLESGQSLSASLVIGA 180

Query: 181 DGANSWVRGQCDIGLDYRSYGQNAIVTNFSCELPHRGVAYQWFSPSEGVIALLPLPGNRV 240
           DGANSWVRGQCDIGLDYR+YGQNAIVTNFSCELPHRGVAYQWFSP+EGVIALLPLPGNRV
Sbjct: 181 DGANSWVRGQCDIGLDYRAYGQNAIVTNFSCELPHRGVAYQWFSPTEGVIALLPLPGNRV 240

Query: 241 SLVWSAPQALADQLLQLPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPHAMIA 300
           SLVWSAPQALADQLL+LPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPHAMIA
Sbjct: 241 SLVWSAPQALADQLLKLPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPHAMIA 300

Query: 301 PRVALIGDAAHVVHPMAGHGMNLGFGDVAALIDILLKREPQYDCGDERVLRRYARARKEE 360
           PRVALIGDAAHVVHPMAGHGMNLGFGDVAALIDILLKREPQYDCGDER+LRRYARARKEE
Sbjct: 301 PRVALIGDAAHVVHPMAGHGMNLGFGDVAALIDILLKREPQYDCGDERLLRRYARARKEE 360

Query: 361 VLLMQIATDGLHRIFSTEAEPVRLVRNLGMSLVNRLPILKRRLIAHALGQ 410
           VLLMQIATDGLHRIFSTEAEPVRLVRNLGMSL+NRLP+LKRRLIAHALGQ
Sbjct: 361 VLLMQIATDGLHRIFSTEAEPVRLVRNLGMSLLNRLPVLKRRLIAHALGQ 410


>gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 185/400 (46%), Gaps = 37/400 (9%)

Query: 18  DICIVGDGAVGKTAALGLAQAGFKVMVLAPPPKDSAPDPASWDVRVYALNHTAHRLLSSV 77
           D+ I G G VG++ A  LA+       +A     S P+ A+ D R  AL++ + ++L  +
Sbjct: 7   DLIICGGGPVGQSVAGLLARRQLPAARIALVDMKS-PEQAAADPRTIALSYGSRQILDEL 65

Query: 78  RVWDAMDTAR-ITPVDNMTVHGDGVPEKARPGLLSFDAYAARTDALAWIVEGRNLDQALD 136
             WD  D  R  T ++   +H   V  +   G    D    +  AL ++     +++AL 
Sbjct: 66  GAWD--DIGRSATAIEQ--IH---VSRRGHFGRTLLDRKDYQLPALGYVARYGEVNRALA 118

Query: 137 AALRFAPNVRVVQGRATALTVAGET--ATLTLESGQSLSASLVIGADGANSWVRGQCDIG 194
           +A+  AP    +   A A  +  E     +TL+ G+ L A LVI A+G    V G+    
Sbjct: 119 SAI--APLGLSLMRPAEAQQIEEEDQHVAVTLKDGRILRAHLVIQAEGG---VFGEQQHK 173

Query: 195 LDYRSYGQNAIVTNFSCE--LPHRGVAYQWFSPSEGVIALLPLPGNRVSLVWSAPQALAD 252
              R Y Q  I+ +   +  + HR  A++ F+  EG +ALLP   +  +LVW    A  +
Sbjct: 174 TLQRDYQQLGIIAHVQADGVIAHR--AFERFT-DEGPLALLP-QDDGYALVWCVRPATGE 229

Query: 253 QLLQLPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRL-IKPHAMIAPRVALIGDAAH 311
           QL+ L  +     L +     +G  T + P    AFPL L  +P    + RV  IG+AA 
Sbjct: 230 QLMALEDAGFLAALQRTFGERVGRFTRISPR--HAFPLGLNARPGQ--SRRVVAIGNAAQ 285

Query: 312 VVHPMAGHGMNLGFGDVAALIDILLKR-EPQYDCGDERVLRRYARARKEEVLLMQIATDG 370
            +HP+AG G+NLG  D   L D+L +   PQ        L+ + R R ++  L    TD 
Sbjct: 286 TLHPVAGQGLNLGLRDARVLADVLAREISPQ-------ALQAFERQRGQDRSLTIRLTDL 338

Query: 371 LHRIF--STEAEPVRLVRNLGMSLVNRLPILKRRLIAHAL 408
           + RIF  S +  P++    L +  ++ LP  +  L  H +
Sbjct: 339 MARIFAGSPQGSPLQAALGLSLGAIDLLPGARGLLAEHMM 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,245,589
Number of extensions: 51069
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,207,925
Effective search space: 390159775
Effective search space used: 390159775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)