BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4053.p
         (596 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313470|ref|YP_003777562.1| bifunctional 3-dehydroquinate s...  1097   0.0  

>gi|300313470|ref|YP_003777562.1| bifunctional 3-dehydroquinate
           synthase/shikimate kinase [Herbaspirillum seropedicae
           SmR1]
          Length = 596

 Score = 1097 bits (2836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/596 (89%), Positives = 559/596 (93%)

Query: 1   MTGSIFLVGLMGAGKTTIGRALAKKLNKRFIDSDHEIEARTGATIPVIFEIEGEENFRRR 60
           MTGSIFLVGLMGAGKTTIGRALAKKLNKRFIDSDHEIEARTGATIPVIFEIEGEENFRRR
Sbjct: 1   MTGSIFLVGLMGAGKTTIGRALAKKLNKRFIDSDHEIEARTGATIPVIFEIEGEENFRRR 60

Query: 61  EAEVIRELAALPDIVLATGGGAVLRAENRENLKKGGTVVYLRASVNQILQRTGRDKNRPL 120
           EAEVIREL ALPDIVLATGGGA+LRAENR+NLKKGGTVVYLRAS+NQILQRTGRDKNRPL
Sbjct: 61  EAEVIRELTALPDIVLATGGGAILRAENRDNLKKGGTVVYLRASINQILQRTGRDKNRPL 120

Query: 121 LQIADPRRKLEELSRQRDPLYREVADFVVETNRPNVQFLVQTIISHLELSPKQEDWLVSP 180
           LQ ADPRRKLEELSRQRDPLYR+VADFV+ETNRPNVQFLVQTIISHLELSP +  W  +P
Sbjct: 121 LQTADPRRKLEELSRQRDPLYRDVADFVIETNRPNVQFLVQTIISHLELSPPESSWQSAP 180

Query: 181 EPDETVVLETSSAVLTQAADGSSTVSHHHSTQIFHGAASAQSEPHRMNQNHASSAAPLTL 240
             DET+V+E SSA++T AADG+  VS  H++Q FHGAASA+    RMNQN AS+ AP+TL
Sbjct: 181 AADETIVIERSSALVTSAADGAVVVSTSHTSQTFHGAASAEPTLARMNQNTASAPAPITL 240

Query: 241 QVELGERSYPIHIGHGLLDDAKLLPQYVKGKRVAIVTNDKVGPLYLDKVGNALRAAGKQV 300
            V+LGERSYPIHIG GLLDDA LLPQYVKGKRVAIVTNDKVGPLYLDKV   LRAAGK V
Sbjct: 241 NVDLGERSYPIHIGRGLLDDAGLLPQYVKGKRVAIVTNDKVGPLYLDKVAQPLRAAGKLV 300

Query: 301 TEIVLPDGEEEKNWASLMKIFDRLLADKCDRKTTLIALGGGVIGDLTGFAAASYMRGVPF 360
           TEIVLPDGEEEKNWASLMKIFDRLLADKCDRKTTLIALGGGVIGDLTGFAAASYMRGVPF
Sbjct: 301 TEIVLPDGEEEKNWASLMKIFDRLLADKCDRKTTLIALGGGVIGDLTGFAAASYMRGVPF 360

Query: 361 VQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPRELAAGIAE 420
           VQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPREL+AGIAE
Sbjct: 361 VQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPRELSAGIAE 420

Query: 421 VIKHGAIIDAPFFDWIETNMARLVSKDDAALAYAIQRSCEIKAEVVRQDEREGGLRAILN 480
           VIKHGAIIDAPFFDWIETN+A+LVSKDDAALAYAIQRSCEIKAEVVRQDEREGGLRAILN
Sbjct: 421 VIKHGAIIDAPFFDWIETNIAQLVSKDDAALAYAIQRSCEIKAEVVRQDEREGGLRAILN 480

Query: 481 FGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLSQRLGYIDHATRERIRAVTAAAGLPT 540
           FGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLS RLGYID   R+R+RA+TAAAGLPT
Sbjct: 481 FGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLSHRLGYIDAGARDRVRALTAAAGLPT 540

Query: 541 VAPNLGTERWLDLMEVDKKNEGGAIKFILIKPLGSPLITNAPQDLLLQTLAACTGE 596
           VAP+LG  RWL+LMEVDKKNEGG IKFILI+PLGSPLITN PQDLLLQTLAACTGE
Sbjct: 541 VAPDLGVARWLELMEVDKKNEGGQIKFILIRPLGSPLITNVPQDLLLQTLAACTGE 596


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,918,643
Number of extensions: 83116
Number of successful extensions: 330
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 505
Effective length of database: 1,188,985
Effective search space: 600437425
Effective search space used: 600437425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)