BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4052.p (688 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal... 927 0.0 gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane ... 78 3e-15 >gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 674 Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/686 (72%), Positives = 560/686 (81%), Gaps = 17/686 (2%) Query: 4 LLLMLAALLTQSASAENRLHAIDLHHRPDGVTLELRLLHPVDAALVGNFQLIDPPQLVLD 63 LLLM +L+ A A RLHA+D+ R + TL LRL + + + +FQL+DPPQLVLD Sbjct: 5 LLLMGVLILSAPALAGPRLHALDIEARDEATTLTLRLDQTLPLSQIHHFQLLDPPQLVLD 64 Query: 64 LPRTTAAAHLARSIAGSGLLKRILLASDDERLRLQLQLKQAVIHRLRTEGDSLLVDLELR 123 LP TT AA +AR A SGLLKR+ LASD ERLRL LK+ + ++L+ + + + V L Sbjct: 65 LPDTTLAAGMARQFAASGLLKRVTLASDGERLRLLATLKRPLHYQLQVQDEQVQVALSPL 124 Query: 124 PAADPAELHAIELQRGPLGEARMTVELGSSSHTVQVRQLGRRLIADIAGASLPPALRRQV 183 P P L I QRG GE R+ ++LGS++ VQVRQ G+RLI DI G +LP RQV Sbjct: 125 PPQAPTALGGIGFQRGSAGEGRLDIDLGSTAPVVQVRQQGQRLIVDIGGTTLPTGSARQV 184 Query: 184 EVGRFATPLTHYSAYPHEGGVRLVLEAQGQWRYQAYQSGQRLMIDVLPVLAGSTSPG-LQ 242 EVG FATP+T Y AYP+E GVRL + AQG WRYQA Q GQ+L IDVLPV S P + Sbjct: 185 EVGDFATPVTQYQAYPYENGVRLAIHAQGLWRYQAVQRGQQLRIDVLPV---SADPHRIA 241 Query: 243 DGKTYAGDRLSLNFQNIDVRTALQVLADFSGVNLVASDAVTGQLSLRLKDLPWDQALDMI 302 K Y G RLSLNFQNI+VRTALQVLADF+G+N++ASDAVTGQLSLRLKD+PW+QAL+MI Sbjct: 242 PDKDYQGARLSLNFQNIEVRTALQVLADFTGLNIIASDAVTGQLSLRLKDVPWEQALEMI 301 Query: 303 LQARGLEMRRSGEVLWIAPREEMLARERQELEQKAMIADLEPLHAESFQLNYQRADTLRK 362 LQARGL ++RSG VLWIAPREEM ARERQELEQKA++ADLEPLHAE+FQLNYQRAD LR+ Sbjct: 302 LQARGLALQRSGGVLWIAPREEMAARERQELEQKALLADLEPLHAETFQLNYQRADNLRR 361 Query: 363 ALGIGEDGNTQANRRNSLLSRRGSAMIDSHTNQLLVTDTLAVLANVRKLIERIDVASRQV 422 ALG+GEDG QANRR SLLSRRGSAMIDSHTNQLLVTDTLA LANVRKLIERID+A+RQV Sbjct: 362 ALGLGEDGTPQANRRASLLSRRGSAMIDSHTNQLLVTDTLAALANVRKLIERIDIAARQV 421 Query: 423 LIEARIVEADDSFARNLGVKLGLAVTTRGAALGNTYAAVGEQSGQGSPSSQNPQAAPTGQ 482 +IEARIVEADDSFARNLGVKLGLA T+GAALGN+YA+VGE SGQ P+ Sbjct: 422 MIEARIVEADDSFARNLGVKLGLAARTQGAALGNSYASVGELSGQTPPA----------- 470 Query: 483 APAGPTLRDPALNLRAEALSGATPGSFAFTLFNAAAQRFLNVELSALEADGRGKIVSSPR 542 AG LR+PAL L A AL+G+ PGSFAFTLFNAAAQRFLNVELSALEA+GRGKIVSSPR Sbjct: 471 --AGTYLREPALGLGAGALAGSAPGSFAFTLFNAAAQRFLNVELSALEAEGRGKIVSSPR 528 Query: 543 LVTADQQTALIEQGEEIPYQQAAGNGTTSTAFKKANLKLEVTPQITPDGNVILDVDVNKD 602 LVTADQQ ALIEQGEEIPYQQ+ G+G T+TAFKKANLKLEVTPQITPDGNVILDVDVNKD Sbjct: 529 LVTADQQAALIEQGEEIPYQQSIGSGATATAFKKANLKLEVTPQITPDGNVILDVDVNKD 588 Query: 603 SRGSVTPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDNDQETRVPLLGEIPVLGALFR 662 SRGS TPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDN+ ETRVPLLGEIP+LGALFR Sbjct: 589 SRGSATPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDNEHETRVPLLGEIPLLGALFR 648 Query: 663 SQSKVRDKTELLIFLTPRIVATPRPY 688 S++KVRDKTELLIFLTPRIVA PRPY Sbjct: 649 SRNKVRDKTELLIFLTPRIVAPPRPY 674 >gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 693 Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 131/311 (42%), Gaps = 59/311 (18%) Query: 390 DSHTNQLLVTDTLAVLANVRKLIERIDVASRQVLIEARIVEADDSFARNLGVKLGLAVTT 449 DS N +++ D +A LI ++DV +QV IEA IV+ D S +GV+ G Sbjct: 307 DSSLNAIMIYDDIAKRDMYAALINQLDVKPQQVEIEALIVDIDRSRLAEMGVEWGARAGV 366 Query: 450 RGAALGNTYAAVGEQSGQGSPSSQNPQAAPTGQAPAGPTLRDPALNLRAEALSGATPGSF 509 + SG P L GAT Sbjct: 367 VNTT---VNGTTTQSSGTDLP------------------------------LPGAT---- 389 Query: 510 AFTLFNAAAQRFLNVELSALEADGRGKIVSSPRLVTADQQTALIEQGEEIPYQQAAGNGT 569 L + A RF L A+E++G +++++P ++T D A+++ + Y G Sbjct: 390 ---LLISDAARFY-ARLKAMESNGEARVLATPTVLTLDNVAAVLDLSQSA-YVSLIGERV 444 Query: 570 TSTAFKKANLKLEVTPQITPDGN---VILDVDVNKDS-------------RGS-VTPGGL 612 + A L V P+I DG V L+VD+ S RG+ + Sbjct: 445 ADMSDITAGTMLRVIPRIIDDGGQTRVRLEVDIEDGSLNNGNNDSGSNSSRGTGASTIAA 504 Query: 613 AINTKHIKTKVQVEDGGTVVIGGIYTQTDNDQETRVPLLGEIPVLGALFRSQSKVRDKTE 672 ++ I T+ ++ T++IGG ++ + +VPLLG++PV+G LFRS+S+ E Sbjct: 505 SVTRSTINTQAIIDAQQTLMIGGYRAESLIRNKQKVPLLGDLPVVGGLFRSESRSNSTRE 564 Query: 673 LLIFLTPRIVA 683 L +TPRI + Sbjct: 565 RLFLITPRITS 575 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,027,946 Number of extensions: 86370 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 290 Number of HSP's successfully gapped: 2 Length of query: 688 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 596 Effective length of database: 1,184,250 Effective search space: 705813000 Effective search space used: 705813000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)