BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4051.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313468|ref|YP_003777560.1| hypothetical protein Hsero_4182...    86   4e-18

>gi|300313468|ref|YP_003777560.1| hypothetical protein Hsero_4182
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score = 85.5 bits (210), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 94/169 (55%), Gaps = 26/169 (15%)

Query: 27  PDEAAATRIWMESTRPLSPP----PPPTVPAAPAPTSAPPVSDDSELADPFHPQQDA--- 79
           PDE A+TR W+   R LS      PP ++  A + T APP+ D  E+ DPF  +QDA   
Sbjct: 26  PDELASTRQWLAGARQLSSQAGAAPPASLVQAASETPAPPLPD-VEIVDPFRLRQDAAAP 84

Query: 80  PASQPKRAPP-----SADEEDDEASPSHTFSPTATSVASAAPAPATLRLLGTLRRDQHWI 134
           PA+  +R P      +++EEDDE  PS    P  T     AP P   RLLGTLR+    +
Sbjct: 85  PATAVERPPQRVRRDASEEEDDEPVPS----PRPT-----APLP---RLLGTLRQQDLML 132

Query: 135 AIAELDGATHRLQVGDMLPGSLGQVMAVREEQIDIAHAGNTR-TISMAS 182
           A+ ++ GATHRLQ G  LP   GQ++ + E  I+IA    TR T+S+ S
Sbjct: 133 ALIDIGGATHRLQAGQQLPDGQGQLLTISETHIEIADPQGTRQTLSLES 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 501,406
Number of extensions: 13952
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)