BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4048.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313466|ref|YP_003777558.1| hypothetical protein Hsero_4180...   172   2e-44

>gi|300313466|ref|YP_003777558.1| hypothetical protein Hsero_4180
           [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  172 bits (437), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/295 (47%), Positives = 181/295 (61%), Gaps = 11/295 (3%)

Query: 14  RLCAGLDITPDRVRLALLRRCGRRAQLLRLTQRLTGGVICTDGQISDFDALLLMCRSLLD 73
           RLC GLD+ P R+RLAL RR GR+ ++LRL Q      +  DGQI+D DA++  CR LLD
Sbjct: 84  RLCIGLDLAPQRLRLALARRRGRQREVLRLAQAALPDGLLQDGQITDLDAVVQACRPLLD 143

Query: 74  DPLCHGAALALALPASSLIGRRLVLPAGATPVQRLVQVRAEMAAHGVGTDDHALDYLELG 133
                 AAL L +P + L  +RLVLPAG++  +RL QVRAEM+A+G+   DH +DY  + 
Sbjct: 144 PACPAQAALVLGMPRTCLSVQRLVLPAGSSDWERLAQVRAEMSAYGLAPADHVMDY-RVA 202

Query: 134 PQAASPADTQVLALAAPTLAVEDRLALAAALSRPLATLAPEDLCLAAWLRADQRSGEHAV 193
           P  A   D  + A AA +LAVEDRLALAAAL RPLA L PED CL  +LR    +   A+
Sbjct: 203 PARAG-QDVSLWAWAASSLAVEDRLALAAALHRPLAALPPEDECLGDFLRPAASAAHDAL 261

Query: 194 LRLDRGGNWLLLGAGPSHPLPPQTASGGYLALLARAAPILRPLPRRLLLSGD------HP 247
           L LD   +WL+ G  P+  L  + A  G  ALLA  AP+LRP P+RLLL         H 
Sbjct: 262 LHLDPDDSWLIYGDTPAQGLRWRPAVAGPTALLAELAPLLRPKPQRLLLDCHPAALPTHD 321

Query: 248 ALGAMARAFGKYAGLDAQVATPPSSLML--SAQIAAQVPI-DYQLALALAWEGLA 299
           AL  +  AF +YAGL A  A  P+ L+L  SA++    P+  + LA+ALAW GLA
Sbjct: 322 ALPMLRAAFARYAGLRALPAPLPADLILAPSARLPGANPVGSFHLAIALAWRGLA 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 828,492
Number of extensions: 28240
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)