BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4044.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176...   419   e-118
gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide prot...   163   1e-41

>gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  419 bits (1076), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/229 (84%), Positives = 216/229 (94%)

Query: 32  AAEGPHPVEKRPFNLPPSAELHYAISAKQSGIDLKGEGLVKWSQNKTAYSVTTETRAMLL 91
           A +GPHPV+KR +NLPPSAEL+Y+I AKQSG+D+KG+GLVKW+Q+KT+YSVT+ETRAMLL
Sbjct: 25  ATDGPHPVDKRAYNLPPSAELNYSIQAKQSGLDVKGQGLVKWTQSKTSYSVTSETRAMLL 84

Query: 92  GKILETSSEGAIDAYGLAPSRFIEKRLRREPTTTTFNREQNKITFTESAESFPLQGGEQD 151
           GKILE +SEGA+DAYGLAP RF+EKRLRREP+TTTFNREQNKITFT+SAES+PLQGGEQD
Sbjct: 85  GKILEATSEGAVDAYGLAPDRFVEKRLRREPSTTTFNREQNKITFTQSAESYPLQGGEQD 144

Query: 152 RTGITWQFVAIARANAAKMKPGSEWKFFVAGPRDAEQWTFKVVGREKVKTAQGETEALHL 211
           RT ITWQFVAIARANAAKMKPGSEW FFVAG RDAEQWTFKVVGREK++T QGETEALHL
Sbjct: 145 RTSITWQFVAIARANAAKMKPGSEWNFFVAGQRDAEQWTFKVVGREKIRTPQGETEALHL 204

Query: 212 FRNPPPDDQAQKLDIWLAPKMEWYPVRLKFTDPNGDYIEQVLDSVNKTH 260
           FR PPPDDQ QKLDIWLAPKMEWYPVRLKFTDP+GDYIEQ LDS+ KT+
Sbjct: 205 FRAPPPDDQGQKLDIWLAPKMEWYPVRLKFTDPDGDYIEQTLDSLKKTN 253


>gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  163 bits (413), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 121/216 (56%), Gaps = 3/216 (1%)

Query: 45  NLPPSAELHYAISAKQSGIDLKGEGLVKWSQNKTAYSVTTETRAMLLGKILETSSEGAID 104
           + PPSA L Y ++         G   + W  +   Y +  E  A+ +   L+ SSEG +D
Sbjct: 41  DAPPSAVLDYDVTGTIDQKPSYGSASLDWRNSGQHYRLEGEVTAIWV-TWLKFSSEGELD 99

Query: 105 AYGLAPSRFIEKRLRREPTTTTFNREQNKITFTESAESFPLQGGEQDRTGITWQFVAIAR 164
           A+G++P+ + EK+  R  T T FNR  + I+F+ S   +P +GGEQDR  + WQ  AI R
Sbjct: 100 AWGVSPTLYTEKKKFRSATNTHFNRNGDSISFSASETRYPRRGGEQDRGSLIWQLAAIGR 159

Query: 165 ANAAKMKPGSEWKFFVAGPRDAEQWTFKVVGREKVKTAQGETEALHLFRNPPPDDQAQKL 224
            + A+ +PG+    FVAG RD E W  +V+G E +K   G  +  H+ R P P     ++
Sbjct: 160 GDPAQFQPGAVIDLFVAGVRDGEVWRMQVIGEEAIKLPIGTLQTWHVVRVPKPGAYEDRI 219

Query: 225 DIWLAPKMEWYPVRLKFTD--PNGDYIEQVLDSVNK 258
           DIWLAP+ EWYP RL++TD  PNGD  E  L  + +
Sbjct: 220 DIWLAPQHEWYPARLRYTDPRPNGDVTELSLSELRR 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 754,037
Number of extensions: 29700
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)