BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4041.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313459|ref|YP_003777551.1| hypothetical protein Hsero_4173...   335   2e-93

>gi|300313459|ref|YP_003777551.1| hypothetical protein Hsero_4173
           [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score =  335 bits (859), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 223/291 (76%), Positives = 241/291 (82%), Gaps = 11/291 (3%)

Query: 1   MLNQEQMPGAGSVADTIEFMKKMWSSMGAPAMATPSLSVEDINKKIADLKTVASWLELNL 60
           MLNQ++MPGAGSV DT+EFMK MWSSMGAPAMATPSLSVEDINKKI DLKTVASWLELNL
Sbjct: 1   MLNQDKMPGAGSVGDTLEFMKNMWSSMGAPAMATPSLSVEDINKKIGDLKTVASWLELNL 60

Query: 61  NMLKATIQTLEVQSATLSTLQAMSAIMASRQAPADETAADEEASTPPPFPFGFPMWPGAG 120
           NMLKATIQTLEVQSATLSTLQAMSAIMAS+QAPAD+ AA EE     PFPFGFPMWPGAG
Sbjct: 61  NMLKATIQTLEVQSATLSTLQAMSAIMASQQAPADD-AAPEEGKAASPFPFGFPMWPGAG 119

Query: 121 AAPQETPEEEPAQAAAQDVAEEQ------VSQAEPPPPVEEEAVVPPAPDFQSAIANPNA 174
           A+  +  +EEPA   AQDVAEEQ      + +    P  E +A    APD Q+A+ANPNA
Sbjct: 120 AS--QAADEEPA--GAQDVAEEQEEPQDELQEEAAAPAGEADAPAAEAPDLQAAMANPNA 175

Query: 175 WWNVLQEQFKHAVGNALAGSTPDQEPLLKPAKPPKAAKRSENKTVAAKPKAPPKGKPAGA 234
           WWN+LQ+QFK AVGNALAG  P+QEPLLKPAKPPKA KRSENKTVAAKPKA PK +PAGA
Sbjct: 176 WWNLLQDQFKQAVGNALAGGQPEQEPLLKPAKPPKAPKRSENKTVAAKPKAAPKVRPAGA 235

Query: 235 SKPVKGAKPAPGKPAVKKAPKRAANTSAPARTAVVQSRQNKKPASRKPTSP 285
            K  K AKPAP KP VKKAP+ AANTSAP RTAVVQSRQNKKPASRKPTSP
Sbjct: 236 PKAGKAAKPAPKKPPVKKAPRSAANTSAPGRTAVVQSRQNKKPASRKPTSP 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.306    0.121    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 439,143
Number of extensions: 10308
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 130 (54.7 bits)