BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4038.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313456|ref|YP_003777548.1| hypothetical protein Hsero_4170...   272   9e-75

>gi|300313456|ref|YP_003777548.1| hypothetical protein Hsero_4170
           [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score =  272 bits (696), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 147/175 (84%), Positives = 156/175 (89%), Gaps = 3/175 (1%)

Query: 1   MKHFFQRTATLAITAALLAAAPLSQAHDYKLGQLDIGHPYARATVPGQPAAGAYVSIENK 60
           + HFFQR A  A+  ALLAAAPLSQAH+YKLGQL+IGHPYARATVPGQPAAGAY+SIENK
Sbjct: 3   LHHFFQRAAGAALATALLAAAPLSQAHEYKLGQLEIGHPYARATVPGQPAAGAYLSIENK 62

Query: 61  GSTPDRLVAVSSPVAKSGEIHTMAMEGNVMKMRELDGGLEVKPGQKITMQPGNGYHIMLM 120
           G+T DRLV VSSP AKSGEIHTMAMEGNVMKMRE+DGGLEVKPGQKI MQPGNGYHIMLM
Sbjct: 63  GATADRLVGVSSPAAKSGEIHTMAMEGNVMKMREVDGGLEVKPGQKIAMQPGNGYHIMLM 122

Query: 121 GLSKPLQAGDKVPVTLTFEKAGKVEVSFNVEDRAATTAGKDDMKDMKDMKGHMHH 175
           GLSKPLQAGDKVP TLTFEKAGKVEV+FNVED  A  AGKD MKDMK+   HMHH
Sbjct: 123 GLSKPLQAGDKVPATLTFEKAGKVEVTFNVEDGKAAAAGKDGMKDMKE---HMHH 174


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 471,009
Number of extensions: 18437
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)