BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4036.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic pro...   619   e-179
gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic pro...   460   e-131

>gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  619 bits (1596), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 311/326 (95%), Positives = 321/326 (98%)

Query: 1   MSYHHKLTLRALVAALSLAAVCAAPAMAAEKSVAVTAIVEHPALDAIRDGVKDELKEEGF 60
           MSY++KLTLRA+VAALSLAAVC+APAMAA+KSVAVTAIVEHPALDA+RDGVKDELKEEGF
Sbjct: 1   MSYNNKLTLRAMVAALSLAAVCSAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGF 60

Query: 61  DAGKNLKWEYQSAQGNTGTAAQIARKFIGDKPDVIVAIATPSAQAVVAATKSIPVVYSGV 120
           +AGKNLKWEYQSAQGNTGTAAQIARKF+GDKPD IVAIATPSAQA+VAATKSIPVVYSGV
Sbjct: 61  EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVAATKSIPVVYSGV 120

Query: 121 TDPVAAQLVKDWKPSGTNVTGVSDLLELDKQVDLIKRVVPKAKRVGMVYNPGEANSAVVV 180
           TDPVAAQLVKDWK SGTNVTGVSDLLELDKQVDLIKRVVP AKRVGMVYNPGEANSAVVV
Sbjct: 121 TDPVAAQLVKDWKASGTNVTGVSDLLELDKQVDLIKRVVPNAKRVGMVYNPGEANSAVVV 180

Query: 181 KALKELLAKSGMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGDD 240
           KALKELLAKS MTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVG+D
Sbjct: 181 KALKELLAKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGND 240

Query: 241 AKIPLVASDTDSVKRGAIAALGVNYYDLGRQTGKVVGRILKGEKPGDIASATSSKLELFV 300
           AKIPLVASDTDSVKRGAIAALGVNYYDLGRQTGKVVGRILKGEKPGDI SATSSKLELFV
Sbjct: 241 AKIPLVASDTDSVKRGAIAALGVNYYDLGRQTGKVVGRILKGEKPGDIPSATSSKLELFV 300

Query: 301 NTAAAQKQGVTLSPELVNSAKTVIKQ 326
           NTAAAQKQGVTLSPELVNSAKTVIKQ
Sbjct: 301 NTAAAQKQGVTLSPELVNSAKTVIKQ 326


>gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  460 bits (1184), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/317 (71%), Positives = 270/317 (85%), Gaps = 1/317 (0%)

Query: 8   TLRALVAALSLAAVCAAPAMAAEKSVAVTAIVEHPALDAIRDGVKDELKEEGFDAGKNLK 67
           +LRA+  AL+L+AVCA+ A+AAEK VAVT+ VEHPALDA+RDG KDEL   GF+ GKNLK
Sbjct: 13  SLRAIAGALALSAVCAS-ALAAEKVVAVTSYVEHPALDAVRDGTKDELVAAGFEPGKNLK 71

Query: 68  WEYQSAQGNTGTAAQIARKFIGDKPDVIVAIATPSAQAVVAATKSIPVVYSGVTDPVAAQ 127
           WE+QSAQ N GTA QIA+KF+GD PDVIVAI TPSAQ +VAATK+IP+VYS + DP+AAQ
Sbjct: 72  WEFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQ 131

Query: 128 LVKDWKPSGTNVTGVSDLLELDKQVDLIKRVVPKAKRVGMVYNPGEANSAVVVKALKELL 187
           LVKDWKPSGTNVTG+S +L+  KQV++IKRVVP+AKRVG+VYNPGEANS   +  LK  L
Sbjct: 132 LVKDWKPSGTNVTGMSHMLDPVKQVEVIKRVVPEAKRVGVVYNPGEANSVSALNNLKGEL 191

Query: 188 AKSGMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGDDAKIPLVA 247
            K+G+TLVEAAAPRSVDV  AAKSLIGK+DV+YT TDNNVVS +E+L KV +DAK+PL+A
Sbjct: 192 QKAGLTLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDNNVVSVFESLAKVCNDAKLPLIA 251

Query: 248 SDTDSVKRGAIAALGVNYYDLGRQTGKVVGRILKGEKPGDIASATSSKLELFVNTAAAQK 307
           SDT SVKRGA+AALGVN+YD+GRQTGK+V RILKGEK GDI S+    LEL+VNT+AAQK
Sbjct: 252 SDTGSVKRGAVAALGVNFYDMGRQTGKLVVRILKGEKAGDIPSSPVKNLELYVNTSAAQK 311

Query: 308 QGVTLSPELVNSAKTVI 324
           QGVTLSPE + SA  V+
Sbjct: 312 QGVTLSPEFLKSATKVL 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 903,921
Number of extensions: 37726
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)