BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4035.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic pro...   626   0.0  
gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic pro...   459   e-130

>gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  626 bits (1615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/323 (94%), Positives = 319/323 (98%)

Query: 1   MFAVSKSLRAIAGALALSAICASALAAEKVVAITSFVEHPALDAVRDGTKDELIAEGFEP 60
           M A+SKSLRAIAGALALSA+CASALAAEKVVA+TS+VEHPALDAVRDGTKDEL+A GFEP
Sbjct: 7   MLALSKSLRAIAGALALSAVCASALAAEKVVAVTSYVEHPALDAVRDGTKDELVAAGFEP 66

Query: 61  GKNLKWDFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPLVAATKTIPIVYSAIAD 120
           GKNLKW+FQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQP+VAATKTIPIVYSAIAD
Sbjct: 67  GKNLKWEFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIAD 126

Query: 121 PMAAQLVKDWKPSGTNVTGLSHMLDPVKQVEIIKRVVPEAKRVGVVYNPGEANSVSALNN 180
           PMAAQLVKDWKPSGTNVTG+SHMLDPVKQVE+IKRVVPEAKRVGVVYNPGEANSVSALNN
Sbjct: 127 PMAAQLVKDWKPSGTNVTGMSHMLDPVKQVEVIKRVVPEAKRVGVVYNPGEANSVSALNN 186

Query: 181 LKGELQKAGLTLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDNNVVSVFESLAKVCNDAR 240
           LKGELQKAGLTLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDNNVVSVFESLAKVCNDA+
Sbjct: 187 LKGELQKAGLTLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDNNVVSVFESLAKVCNDAK 246

Query: 241 IPLIASDTGSVKRGAIAALGVNFYDMGRQTGKVVARILKGEKAGDIASSPVKNLELYVNT 300
           +PLIASDTGSVKRGA+AALGVNFYDMGRQTGK+V RILKGEKAGDI SSPVKNLELYVNT
Sbjct: 247 LPLIASDTGSVKRGAVAALGVNFYDMGRQTGKLVVRILKGEKAGDIPSSPVKNLELYVNT 306

Query: 301 SAAQKQGVTLSPEFLKSATKVLN 323
           SAAQKQGVTLSPEFLKSATKVLN
Sbjct: 307 SAAQKQGVTLSPEFLKSATKVLN 329


>gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  459 bits (1182), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/317 (71%), Positives = 266/317 (83%), Gaps = 1/317 (0%)

Query: 7   SLRAIAGALALSAIC-ASALAAEKVVAITSFVEHPALDAVRDGTKDELIAEGFEPGKNLK 65
           +LRA+  AL+L+A+C A A+AA+K VA+T+ VEHPALDAVRDG KDEL  EGFE GKNLK
Sbjct: 8   TLRAMVAALSLAAVCSAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGFEAGKNLK 67

Query: 66  WDFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPLVAATKTIPIVYSAIADPMAAQ 125
           W++QSAQ N GTA QIA+KFVGD PD IVAI TPSAQ LVAATK+IP+VYS + DP+AAQ
Sbjct: 68  WEYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVAATKSIPVVYSGVTDPVAAQ 127

Query: 126 LVKDWKPSGTNVTGLSHMLDPVKQVEIIKRVVPEAKRVGVVYNPGEANSVSALNNLKGEL 185
           LVKDWK SGTNVTG+S +L+  KQV++IKRVVP AKRVG+VYNPGEANS   +  LK  L
Sbjct: 128 LVKDWKASGTNVTGVSDLLELDKQVDLIKRVVPNAKRVGMVYNPGEANSAVVVKALKELL 187

Query: 186 QKAGLTLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDNNVVSVFESLAKVCNDARIPLIA 245
            K+ +TLVEAAAPRSVDV  AAKSLIGK+DV+YT TDNNVVS +E+L KV NDA+IPL+A
Sbjct: 188 AKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVA 247

Query: 246 SDTGSVKRGAIAALGVNFYDMGRQTGKVVARILKGEKAGDIASSPVKNLELYVNTSAAQK 305
           SDT SVKRGAIAALGVN+YD+GRQTGKVV RILKGEK GDI S+    LEL+VNT+AAQK
Sbjct: 248 SDTDSVKRGAIAALGVNYYDLGRQTGKVVGRILKGEKPGDIPSATSSKLELFVNTAAAQK 307

Query: 306 QGVTLSPEFLKSATKVL 322
           QGVTLSPE + SA  V+
Sbjct: 308 QGVTLSPELVNSAKTVI 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 894,570
Number of extensions: 36933
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)