BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4034.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313453|ref|YP_003777545.1| ABC transporter permease [Herba...   528   e-151

>gi|300313453|ref|YP_003777545.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  528 bits (1360), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/297 (96%), Positives = 291/297 (97%)

Query: 1   MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGYNPFL 60
           MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGYNPFL
Sbjct: 1   MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGYNPFL 60

Query: 61  ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120
           +TF+ALLAGALAGF TAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF
Sbjct: 61  STFIALLAGALAGFTTAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120

Query: 121 TILQPGWIPDYVGRPLILLVVVTAAKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR 180
           TILQP  IPDYV RPLILLVVV  AKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR
Sbjct: 121 TILQPDAIPDYVARPLILLVVVIGAKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR 180

Query: 181 ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL 240
           ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL
Sbjct: 181 ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL 240

Query: 241 AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKLKLLRKGA 297
           AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKLKLL+KGA
Sbjct: 241 AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKLKLLKKGA 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 730,975
Number of extensions: 28072
Number of successful extensions: 232
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 7
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)