BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4033.p (264 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313452|ref|YP_003777544.1| ABC transporter ATPase [Herbasp... 520 e-149 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 102 4e-23 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 100 9e-23 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 96 2e-21 gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC t... 95 5e-21 >gi|300313452|ref|YP_003777544.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 520 bits (1339), Expect = e-149, Method: Compositional matrix adjust. Identities = 257/264 (97%), Positives = 261/264 (98%) Query: 1 MLKATDLKITFNPGTPIENPALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDS 60 MLKATDLKITFNPGTPIENPALRGLSLE+PTGQFVAVIGSNGAGKSTFLNAISGDLLVD+ Sbjct: 1 MLKATDLKITFNPGTPIENPALRGLSLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDT 60 Query: 61 GKIEIDGTDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFQFAIR 120 GKIEID TDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGF FAIR Sbjct: 61 GKIEIDSTDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFNFAIR 120 Query: 121 GKMRELFREKLAILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALD 180 GKMRELFREKL+ILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALD Sbjct: 121 GKMRELFREKLSILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALD 180 Query: 181 PKTAAFVLELTAKIVAEGKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPERAGLD 240 PKTAAFVLELTAKIV+E KLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPERAGLD Sbjct: 181 PKTAAFVLELTAKIVSESKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPERAGLD 240 Query: 241 VPDLLKMFEQTRGEKLSDDALLLG 264 VPDLLKMFEQTRGEKLSDDALLLG Sbjct: 241 VPDLLKMFEQTRGEKLSDDALLLG 264 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 102 bits (254), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 22/232 (9%) Query: 1 MLKATDLKITFNPGTPIENPALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDS 60 ++K DL +F N L G+SL+V GQ VA+IG +G+GKST L ++G VD+ Sbjct: 4 IVKIKDLHKSFG-----SNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDA 58 Query: 61 GKIEIDGTDVTRKQAWDRAGM---VARVFQDPMAGTCEALTIEENMALAMARGRRRGFQF 117 G I++ G D+ + + V VFQ LT+E N+ LA+ ++ + Sbjct: 59 GDIQVCGHDIHHPDKLNLRELRKQVGIVFQS--YNLFPHLTVERNITLALTTIKKMSTEQ 116 Query: 118 A--IRGKMRELFREKLAILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEH 175 A I K+ +L +GLEN+ LSGGQ Q V++ + ++L DE Sbjct: 117 AKTIAHKVLQL---------VGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEV 167 Query: 176 TAALDPKTAAFVLELTAKIVAEGKLTTMMVTHSMRQALDYGDRTVMLHQGRV 227 T+ALDP+ A VL++ + A G +T ++VTH M A D V +HQG+V Sbjct: 168 TSALDPELTAEVLKVMEDL-ARGGMTMVLVTHEMAFARKLADVLVFMHQGQV 218 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 100 bits (250), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 112/211 (53%), Gaps = 12/211 (5%) Query: 19 NPALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRKQAW-- 76 N L G+SL V GQ VA+IG +G+GKST L I+G +D G I + G +T K Sbjct: 16 NQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITVAGHKLTHKHEHLI 75 Query: 77 DRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFQFAIRGKMRELFREKLAILNL 136 + V VFQ LT+EEN+ L+ ++ + A ++ + + Sbjct: 76 ELRKDVGMVFQH--YNLFPHLTVEENIMLSPRIVKKTATETARETAIK-------VLKQV 126 Query: 137 GLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVA 196 GL+++ LSGGQ+Q V++ + +++L DE T+ALDP+ A VL++ ++ A Sbjct: 127 GLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVMEEL-A 185 Query: 197 EGKLTTMMVTHSMRQALDYGDRTVMLHQGRV 227 G +T ++VTH M A D TV +HQG+V Sbjct: 186 RGGMTMLLVTHEMEFARRVADLTVFMHQGKV 216 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 14/213 (6%) Query: 18 ENPALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRKQAWD 77 +N L+G+S EV G+ +A+IG++G+GKST L I +DSG IE+ G V Q D Sbjct: 38 DNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEVAGIRVDDPQV-D 96 Query: 78 RAGM---VARVFQDPMAGTCEALTIEENMALAMARGRRRGFQFAIRGKMRELFREKLAIL 134 + V VFQ L + EN+ LA+ ++ + K A+ Sbjct: 97 LHKLRREVGIVFQS--YNLFPHLNVLENVMLALRHVKQ-------QDKAEARRVALAALA 147 Query: 135 NLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKI 194 +GL+ + LSGGQ+Q V++ + +++L DE T+ALDP+ VL + + Sbjct: 148 QVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVMEDL 207 Query: 195 VAEGKLTTMMVTHSMRQALDYGDRTVMLHQGRV 227 A G +T ++VTH M A DR + +HQGRV Sbjct: 208 AANG-MTMLLVTHEMNFAKRVADRIIYMHQGRV 239 >gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 95.1 bits (235), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 10/231 (4%) Query: 19 NPALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRK--QAW 76 +P LRG+ LE+ G+ A+IG NGAGKS+ + +SG D+G+I + G D+TR+ Q Sbjct: 19 SPILRGVDLELRAGERCALIGPNGAGKSSLFHLVSGRYRADAGRITLHGVDITRQSPQQI 78 Query: 77 DRAGMVARVFQDPMAGTCEALTIEENM--ALAMARGRRRGFQFAIRGKMRELFREKLAIL 134 +R G+ AR FQ + L+ EN+ AL G R F + G R + Sbjct: 79 NRLGL-ARSFQ--ITSLFPRLSAFENVRCALLWTLGYRYAFWRRMGGSHEASARALTVLQ 135 Query: 135 NLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKI 194 +GL R G LS +++A+ L + + ++LLDE TA + +A ++ L + Sbjct: 136 QVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESAAMVALI-RE 194 Query: 195 VAEGKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPE-RAGLDVPDL 244 V GK T +MV H M+ D DR ++ GRV+ + P RA DV L Sbjct: 195 VTMGK-TLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQAL 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 773,565 Number of extensions: 30740 Number of successful extensions: 485 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 331 Number of HSP's successfully gapped: 134 Length of query: 264 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 181 Effective length of database: 1,226,865 Effective search space: 222062565 Effective search space used: 222062565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)