BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4030.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313449|ref|YP_003777541.1| SAM-dependent methyltransferase...   603   e-174

>gi|300313449|ref|YP_003777541.1| SAM-dependent methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  603 bits (1554), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/314 (92%), Positives = 305/314 (97%)

Query: 1   MSLPPPSASAKLSAPIDLPLVRRRFGQPQRVAESDFLRREVSARMQERLALVKIDPREVL 60
           MSLPPPSASAKLSAPIDLPLVRRRF  PQRVAESDFLRREVSARMQERLALVKI PREVL
Sbjct: 16  MSLPPPSASAKLSAPIDLPLVRRRFAHPQRVAESDFLRREVSARMQERLALVKIHPREVL 75

Query: 61  DAGCGEGADLPVLQKRYPQAQVIGLDGAYAMLAKAADHQRGAQTAMNRLFGSINKWLGSP 120
           DAGCGEGADLPVLQKRYP+AQV+GLDGAY MLA AA+HQRGAQ+AMNRLFGSINKWLGS 
Sbjct: 76  DAGCGEGADLPVLQKRYPEAQVVGLDGAYGMLAVAAEHQRGAQSAMNRLFGSINKWLGSG 135

Query: 121 PSGNGPQLACADFARLPLAPNALDLVWSNLALHWHPQPDRVFAEWRRVLRVEGLLMFSCF 180
           P+ +GP+LACADFARLPLA NALDLVWSNLALHWHPQPDRVFAEWRRVLRVEGLLMFSCF
Sbjct: 136 PALSGPELACADFARLPLAANALDLVWSNLALHWHPQPDRVFAEWRRVLRVEGLLMFSCF 195

Query: 181 GPDTLREVRSAFEQIDLAPHTLPFVDMHDFGDMLVNAGFSTPVMDMETITVTYETPQRLL 240
           GPDTLREVRSAFE+IDLAPHTLPFVDMHDFGDMLVNAGFSTPVMDMETITVTY+TPQRLL
Sbjct: 196 GPDTLREVRSAFERIDLAPHTLPFVDMHDFGDMLVNAGFSTPVMDMETITVTYDTPQRLL 255

Query: 241 EDVRAWGGNPLESRRRSMMSRSQYQRLLAAFEAMRKPDGKIPLSFEIVYGHAFRPVPKTT 300
           EDVRAWGGNPLE+RRRSMMSR QYQRLLAAFEAMRKPDGKIPL+FEI+YGHAFRPVPKTT
Sbjct: 256 EDVRAWGGNPLETRRRSMMSRDQYQRLLAAFEAMRKPDGKIPLTFEIIYGHAFRPVPKTT 315

Query: 301 AAGESIIRFERPPR 314
           AAGESIIRF+RPPR
Sbjct: 316 AAGESIIRFDRPPR 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,012,402
Number of extensions: 43327
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)