BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4024.p
         (77 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313444|ref|YP_003777536.1| transmembrane protein [Herbaspi...   120   1e-29

>gi|300313444|ref|YP_003777536.1| transmembrane protein
          [Herbaspirillum seropedicae SmR1]
          Length = 81

 Score =  120 bits (302), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/75 (92%), Positives = 72/75 (96%)

Query: 1  LNDELKQAAQRKASFGLTMKAVFWSFFGVRKRKDYESDAAKLNPVHVIIAGILGAAIFVA 60
          L DELKQAAQR+ASFG TMKAVFWSFFGVRKRKDYESDAA+LNPVHVIIAGILGAA+FVA
Sbjct: 6  LTDELKQAAQRRASFGATMKAVFWSFFGVRKRKDYESDAARLNPVHVIIAGILGAALFVA 65

Query: 61 VLVIIVKLVVASATG 75
          VLVIIVKLVV SATG
Sbjct: 66 VLVIIVKLVVGSATG 80


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 156,550
Number of extensions: 3304
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 77
Length of database: 1,619,870
Length adjustment: 48
Effective length of query: 29
Effective length of database: 1,392,590
Effective search space: 40385110
Effective search space used: 40385110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)