BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4018.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferas...   584   e-168
gi|300313090|ref|YP_003777182.1| 4-hydroxybenzoate octaprenyltra...    78   7e-16

>gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferase
           (heme O synthase) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 297

 Score =  584 bits (1506), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/297 (96%), Positives = 294/297 (98%)

Query: 1   MTTLTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLSTPELPDWHKVIFGTLGIWLLAGA 60
           MTTLTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLSTP+LPDWHKVIFGTLGIWLLAGA
Sbjct: 1   MTTLTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLSTPDLPDWHKVIFGTLGIWLLAGA 60

Query: 61  AFAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWL 120
           AFAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWL
Sbjct: 61  AFAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWL 120

Query: 121 TFATFVGYAIIYTIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIW 180
           TFATFVGYAIIYTI+LKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIW
Sbjct: 121 TFATFVGYAIIYTIVLKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIW 180

Query: 181 TPPHFWALAMYRRDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLI 240
           TPPHFWALAMYRRDDYAKSGLPMLPITHGM+VTKLH+LMYTIAL AVS+LPFAIGMSGLI
Sbjct: 181 TPPHFWALAMYRRDDYAKSGLPMLPITHGMDVTKLHVLMYTIALFAVSLLPFAIGMSGLI 240

Query: 241 YLGAAVLLGAIFFWYSWQIYRHYTDLIARKAFAYSIIYLSILFAVLLVDHYFLFRSF 297
           YLG AV+LGAIFFWYSWQ+YR YTDLIARKAFAYSI+YLSILFAVLLVDHYFLFRSF
Sbjct: 241 YLGTAVVLGAIFFWYSWQMYRRYTDLIARKAFAYSIVYLSILFAVLLVDHYFLFRSF 297


>gi|300313090|ref|YP_003777182.1| 4-hydroxybenzoate
           octaprenyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 125/275 (45%), Gaps = 11/275 (4%)

Query: 19  KPRVTQLAVFCAVIGMFLSTPELPDWHKVIFGTLGIWLLAGAAFAINCLVEREIDSRMAR 78
           KP    L ++  +I ++L+   +PDW  ++   +G  L+  A  AIN   +R  D  + R
Sbjct: 15  KPIGILLLLWPTLIALWLAAGGVPDWRILVIYIVGTVLMRSAGCAINDYADRNFDRHVKR 74

Query: 79  TARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATFV---GYAIIYTII 135
           T +RP+  G+I   + L+ +GVL  +   ++  L N LT+ L+ A  +    Y       
Sbjct: 75  TEQRPLTSGKIKSWEALMVAGVLALVSFLLILPL-NALTLQLSVAAVIIAGTYPYFKRFF 133

Query: 136 LKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWTPPHFWALAMYRRDD 195
             P     I  G     +P  +G+A++   VP+ AWVL++    W   +    AM  RDD
Sbjct: 134 AIPQAYLGIAFGF---GIP--MGFASVTGTVPLAAWVLLVANIFWAVAYDTEYAMVDRDD 188

Query: 196 YAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLIYLGAAVLLGAIFFWY 255
             K G+    IT G       +L Y +AL  + M+    G+   ++  A +L+   F  Y
Sbjct: 189 DLKIGIKTSAITFGRYDVAAVMLCYAVALALIWMVGLQYGLG--LWFSAGMLVACGFAVY 246

Query: 256 SWQIYRHYTDLIARKAFAYSIIYLSILFAVLLVDH 290
            + + R    +    AF  +    + +FA + +D+
Sbjct: 247 HYTLIRERDRMRCFAAFNNNNWLGAAIFAGVALDY 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 867,544
Number of extensions: 32451
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)