BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4015.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313435|ref|YP_003777527.1| hypothetical protein Hsero_4149...   454   e-129
gi|300313036|ref|YP_003777128.1| hypothetical protein Hsero_3742...    58   1e-09

>gi|300313435|ref|YP_003777527.1| hypothetical protein Hsero_4149
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  454 bits (1169), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/313 (69%), Positives = 251/313 (80%)

Query: 1   MLKHITAPRLSTLQRFFMTTSQRDALGCYAWNQAIGAGMLPILGDFEVALRNALHRALSQ 60
           M KH + PRL+ L  FF+TTS RDALGCYAWNQA+ AG LP+L D EV+LRNALHRALSQ
Sbjct: 1   MQKHFSTPRLAALDSFFVTTSHRDALGCYAWNQAVSAGFLPLLADVEVSLRNALHRALSQ 60

Query: 61  YFGAVDSFGWMMPRPNPAHAINPAAPALLPPIHKLTPKSRDDVVSAMEKVKAKKPMAYMV 120
           YF AVDS  WMMPRPNPAH INPAAP  LPP+HKLTPK+R+DVVSAM K+KA+KP  Y+V
Sbjct: 61  YFHAVDSSDWMMPRPNPAHGINPAAPVQLPPVHKLTPKAREDVVSAMGKIKARKPAGYLV 120

Query: 121 SPDDVVAALPFGFWEVLIGGLAHHSQPRGLQSAILASVFPHAPDIAAIPYGSQVFKKRVV 180
           SPDDVVAALPFGFWEVLI GLAH SQP GLQ+AILA+ FP+A D A  PYGSQ F+ R+V
Sbjct: 121 SPDDVVAALPFGFWEVLIAGLAHRSQPPGLQAAILAAAFPYAADTATTPYGSQDFRMRLV 180

Query: 181 DLLKRIRDVRNRIGHHDALWSTPEFNHFGVLGHIPRRPRHTINSLRRFVDNISWFGGWID 240
            LLKRIRD+RNRIGHH+ALWSTPEFN FGVLGHIPRRPRHT+NSLR+F + +SWFGGWID
Sbjct: 181 KLLKRIRDIRNRIGHHEALWSTPEFNVFGVLGHIPRRPRHTVNSLRKFAEKLSWFGGWID 240

Query: 241 PAITTYLHNSDHWWSLQVLLDRRALAIYRHSGGVAGTYRSILDAAELPVTRLTLRRKPWS 300
           P I+ Y+ N+DHWWSLQVLL R+ALA YR  GG  GTYR +L+A   P        +   
Sbjct: 241 PGISAYMQNNDHWWSLQVLLQRQALATYRVLGGAVGTYRRLLEATRTPANGTMPTLRTRH 300

Query: 301 RQPERACRDRYFY 313
           ++ +R   DRY++
Sbjct: 301 KRHKRRIVDRYYF 313


>gi|300313036|ref|YP_003777128.1| hypothetical protein Hsero_3742
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 100/245 (40%), Gaps = 43/245 (17%)

Query: 5   ITAPRLSTLQRFFMTTSQRDALGCYAWNQAIGAGMLPILGDFEVALRNALHRALSQYFGA 64
           ++A RL+T +     ++   A+  Y+W+  + A     L   EV++RNA+  AL   +G 
Sbjct: 17  LSAARLATFEDAAGFSATTCAVEKYSWHALMSAAFFASLHVCEVSMRNAVDNALCAVYGQ 76

Query: 65  VDSFGWMMPRPNPAHAINPAAPALLPPIHKLTPKSRDDVVSAMEKVKAKKPMAYMVSPDD 124
                W   R       NP  P   P              + +++ +AK P+    +   
Sbjct: 77  ----DWPWNRNFERSLANPGGPHFQP-------------RTELQRARAKMPIG---ATGK 116

Query: 125 VVAALPFGFWEVLIGGLAHHSQPRGLQSAILASVFPHAPDIAAIPYGSQVFKKRVVDLLK 184
           V+A L F FW  +        Q R   S +L   FPH P     P    + ++ +   L+
Sbjct: 117 VIAELKFAFWCHMFTA---RYQGRIWDSQVL-PCFPHFPH----PTQPALVRQTIHAELE 168

Query: 185 RIRDVRNRIGHHDALWSTPEFNHFGVLGHIPRRPRHTINSLR--RFVDNISWFGGWIDPA 242
            +R  RNRI HH+ + S P       L H+    + +I SL   R  D   W G W    
Sbjct: 169 CLRRFRNRIAHHEPILSDP-------LPHL----QASIQSLIHWRCPDLAHWHGTW--ET 215

Query: 243 ITTYL 247
           +T YL
Sbjct: 216 VTRYL 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,002,113
Number of extensions: 41196
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)