BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4013.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspir... 451 e-128 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 147 7e-37 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 144 6e-36 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 140 7e-35 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 139 1e-34 >gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspirillum seropedicae SmR1] Length = 230 Score = 451 bits (1159), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/230 (96%), Positives = 227/230 (98%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 MIEFTRVSKQYAREVYALRDITLSV+KGELIFLAGPSGAGKSTLLKMIAAIERPT+GKL Sbjct: 1 MIEFTRVSKQYAREVYALRDITLSVRKGELIFLAGPSGAGKSTLLKMIAAIERPTAGKLA 60 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVMLPLIVTGSSRPDAEKRARA 120 V+GTDI GLKASGLPYLRRNLGLIFQQQKLLLDRNLL+NVMLPLIVTGSSR DAE+RARA Sbjct: 61 VNGTDIGGLKASGLPYLRRNLGLIFQQQKLLLDRNLLSNVMLPLIVTGSSRQDAERRARA 120 Query: 121 ALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAAL 180 ALDKVDLLGKAMCEP+ELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAAL Sbjct: 121 ALDKVDLLGKAMCEPMELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAAL 180 Query: 181 KSFHGVGVTCLISTHDEQFLTGADRIIYLDRGRIVDGWHNGVANPVEVSP 230 KSFHGVGVTCLISTHDEQFLTGADRIIYLDRGRIVDGWHNGVANPVEVSP Sbjct: 181 KSFHGVGVTCLISTHDEQFLTGADRIIYLDRGRIVDGWHNGVANPVEVSP 230 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 147 bits (371), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 134/232 (57%), Gaps = 7/232 (3%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 MIE R+SK + R L+D++LSV +GE++ L GPSG+GKST+L+ I +E G + Sbjct: 1 MIEVKRISKCFGRH-EVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDIL 59 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVML-PLIVTGSSRPDAEKRAR 119 + G V + LR +G++FQ+ L R +L NV P+ V G +R A A Sbjct: 60 IDGQR-VDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAM 118 Query: 120 AALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAA 179 + LDKV L + P +LSGG+QQRVAIAR++ +P+ IL DEPT+ LD +VLA Sbjct: 119 SLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAV 178 Query: 180 LKSFHGVGVTCLISTHDEQFLTG-ADRIIYLDRGRIVDGWHNGVANPVEVSP 230 +++ G+T ++ TH+ F ADR+ +L G IV+ +G A V P Sbjct: 179 MRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVE---SGAAAQVLAEP 227 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 144 bits (363), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 1/203 (0%) Query: 14 EVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLTVSGTDIVGLKASG 73 ++ L D+ L + GEL+ + G SG+GKSTL+ ++ +++P++G V+G + L A Sbjct: 21 KITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGSYLVAGRETGKLDADE 80 Query: 74 LPYLRR-NLGLIFQQQKLLLDRNLLANVMLPLIVTGSSRPDAEKRARAALDKVDLLGKAM 132 L LRR + G IFQ+ LL D + ANV +P + G +RA L ++ L ++ Sbjct: 81 LAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQRAGELLARLGLAERSH 140 Query: 133 CEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAALKSFHGVGVTCLI 192 +P +LSGG+QQRV+IARA++N +ILADEPT LD + +V+ LK H G T +I Sbjct: 141 HKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEVIKILKELHAEGHTIII 200 Query: 193 STHDEQFLTGADRIIYLDRGRIV 215 THD Q + A RII + G I+ Sbjct: 201 VTHDMQVASHAQRIIEIKDGVII 223 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 140 bits (354), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 129/220 (58%), Gaps = 5/220 (2%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 M+EF VSK++ V L I L+++KGE++ L GPSG+GKSTLL+ I A+E G L Sbjct: 1 MVEFKSVSKRFGSNV-VLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLL 59 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVML-PLIVTGSSRPDAEKRAR 119 V G ++ +S + +R+ G++FQQ L L NV P V G+S +A A Sbjct: 60 VDGISVLS-GSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGPRHVRGASSEEANALAS 118 Query: 120 AALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAA 179 L KV L + P ELSGG+QQRVAIARA+ RP+++L DEPT+ LD +VL Sbjct: 119 ELLAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELRQEVLRV 178 Query: 180 LKSFHGVGVTCLISTHDEQFLTG-ADRIIYLDRGRI-VDG 217 ++S G+T ++ TH+ F R+I+++ G I +DG Sbjct: 179 MQSLAEEGMTMIVVTHEISFARRVGTRLIFMENGHIAIDG 218 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 132/218 (60%), Gaps = 3/218 (1%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 MIE V++++ V A+R + LS++KGE+ + G SGAGKSTL++ + + RPTSG++ Sbjct: 1 MIEIQAVTQRFG-NVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIV 59 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVMLPLIVTGSSRPDAEKRARA 120 + G D+ L A+ L RR +G+IFQ LL R++ N+ LPL + G S+ + + Sbjct: 60 LDGQDLTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEP 119 Query: 121 ALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAAL 180 L+ V L P ++SGG++QRV IARA+ N P+++L+DE T+ LD +L L Sbjct: 120 LLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELL 179 Query: 181 KSFHG-VGVTCLISTHDEQFLTG-ADRIIYLDRGRIVD 216 + + +G+T ++ TH + + DR+ ++ G++++ Sbjct: 180 RKINKELGLTIVLITHQMEVIKQICDRVAVMEAGQVIE 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 705,796 Number of extensions: 29672 Number of successful extensions: 500 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 150 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)