BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4001.p (401 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 732 0.0 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 622 e-179 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 273 2e-74 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 266 1e-72 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 229 3e-61 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/401 (94%), Positives = 393/401 (98%) Query: 1 MQALICDAIRTPFGRYGGALGAMRADDLAAAPIRSLMERNPGVDWSRVDDILYGCANQAG 60 M+ALICDAIRTPFGRYGGALGA+RADDLAAAPIRSLMERNPGVDWSRV+DILYGCANQAG Sbjct: 1 MEALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAG 60 Query: 61 EDNRNVARMAGLLAGLPIEVPGTTINRLCGSSLDAVGLAARAIKSGEVELMIAGGVESMT 120 EDNRNVARMAGLLAGLPI VPG+T+NRLCGSSLDAVG+AARAIKSGEV+LMIAGGVESMT Sbjct: 61 EDNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT 120 Query: 121 RAPFVMGKAESAFSRSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFRINRADQ 180 RAPFVMGKAESAF+RSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDF+INRADQ Sbjct: 121 RAPFVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQ 180 Query: 181 DAFALRSQQRWAAAQEAGFFAGEIAPLAIPQKKGDPLIITTDEHPRPDTTLGTLSKLKGV 240 DAFALRSQQRWAAAQ AGFFAGEIAPL IPQKKGDPL++TTDEHPRPDTTL TL+KLKGV Sbjct: 181 DAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLKGV 240 Query: 241 VRPDGTVTAGNASGVNDGACALLLASPQAADRYRLQPRARVLGMATAGVAPRIMGFGPAP 300 VRPDGTVTAGNASGVNDGACALLLASP+AAD YRL+PRARVLGMATAGVAPRIMGFGPAP Sbjct: 241 VRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAP 300 Query: 301 AARKVLAQVGLTLAQMDVIELNEAFAAQGLAVTRELGLPDDAAHVNPNGGAIAIGHPLGA 360 A RKVLAQVGLTLAQMDVIELNEAFAAQGLAV R+LGLPDDAAHVNPNGGAIAIGHPLGA Sbjct: 301 AVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGA 360 Query: 361 SGARLVTTALNQLECSGGRYALCTMCIGVGQGIALVIERVA 401 SGARLVTTA+NQLE SGGRYALCTMCIGVGQGIALVIERVA Sbjct: 361 SGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERVA 401 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 622 bits (1603), Expect = e-179, Method: Compositional matrix adjust. Identities = 306/397 (77%), Positives = 350/397 (88%), Gaps = 1/397 (0%) Query: 4 LICDAIRTPFGRYGGALGAMRADDLAAAPIRSLMERNPGVDWSRVDDILYGCANQAGEDN 63 ICDAIRTP GRYGGAL +RADDL A P+R+LMERNP VDW VDD++YGCANQAGEDN Sbjct: 5 FICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQAGEDN 64 Query: 64 RNVARMAGLLAGLPIEVPGTTINRLCGSSLDAVGLAARAIKSGEVELMIAGGVESMTRAP 123 RNVARM+ LLAGLP EVPG+TINRLCGS +DA+G AARAIKSGE +LMIAGGVESMTRAP Sbjct: 65 RNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESMTRAP 124 Query: 124 FVMGKAESAFSRSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFRINRADQDAF 183 FVMGKA+SAFSR AAI DTTIGWRFVN LMK +YG+D+MPETAENVA DF+++RADQD F Sbjct: 125 FVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRADQDQF 184 Query: 184 ALRSQQRWAAAQEAGFFAGEIAPLAIPQKKGDPLIITTDEHPRPDTTLGTLSKLKGVVRP 243 A+RSQ + AAAQ G A EI P+ IPQKKGDP+ +T DEHPR T++ L++LKGVV+P Sbjct: 185 AVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRA-TSMEALARLKGVVKP 243 Query: 244 DGTVTAGNASGVNDGACALLLASPQAADRYRLQPRARVLGMATAGVAPRIMGFGPAPAAR 303 DG+VTAGNASGVNDGACALLLAS +A ++Y+L+PRAR+LGMATAGVAPRIMG GPAPA++ Sbjct: 244 DGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAPASK 303 Query: 304 KVLAQVGLTLAQMDVIELNEAFAAQGLAVTRELGLPDDAAHVNPNGGAIAIGHPLGASGA 363 KVLAQ+G+T+ QMDVIELNEAFA+QGLAV RELG+ DD A VNPNGGAIA+GHPLG SGA Sbjct: 304 KVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGMSGA 363 Query: 364 RLVTTALNQLECSGGRYALCTMCIGVGQGIALVIERV 400 RLVTTA QLE +GGRYALCTMCIGVGQGIA+VIERV Sbjct: 364 RLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV 400 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 273 bits (698), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/400 (40%), Positives = 242/400 (60%), Gaps = 17/400 (4%) Query: 4 LICDAIRTPFGRYGGALGAMRADDLAAAPIRSLMERNPGVDWSRVDDILYGCANQAGEDN 63 +I A RT G++GGAL + A DL A I++L+ + G+ + +++ G AG Sbjct: 5 VIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKT-GIKPEAISEVILGQVLTAGL-G 62 Query: 64 RNVARMAGLLAGLPIEVPGTTINRLCGSSLDAVGLAARAIKSGEVELMIAGGVESMTRAP 123 +N AR + + +GLP VP + ++CGS L AV LAA+AI+ G+ +++IAGG E+M+ +P Sbjct: 63 QNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSASP 122 Query: 124 FVMGKAESAFSR-SAAIFDTTIG---WRFVNPLMKAQYGIDSMPETAENVATDFRINRAD 179 V+ + F A + DT I W N QY M TAENVA F I+R + Sbjct: 123 HVLNNSRDGFRMGDAKLTDTMIVDGLWDVYN-----QY---HMGITAENVAKKFEISREE 174 Query: 180 QDAFALRSQQRWAAAQEAGFFAGEIAPLAIPQKKGDPLIITTDEHPRPDTTLGTLSKLKG 239 QDAFA SQ + AAQ+AG F EI P+ I KK + ++ TDE + T +L+ L+ Sbjct: 175 QDAFAAASQNKAEAAQKAGKFKDEIVPIEIKGKK-ETVVFDTDEFVKHGVTAESLATLRP 233 Query: 240 VVRPDGTVTAGNASGVNDGACALLLASPQAADRYRLQPRARVLGMATAGVAPRIMGFGPA 299 GTVTAGNASG+NDGA A+++ S + A L A++ ++AG+ P IMG GP Sbjct: 234 AFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPV 293 Query: 300 PAARKVLAQVGLTLAQMDVIELNEAFAAQGLAVTRELGLPDDAAHVNPNGGAIAIGHPLG 359 PA++ L + G T +D++E+NEAFAAQ +AV +++G D + +N NGGAIA+GHP+G Sbjct: 294 PASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGW--DTSKINVNGGAIALGHPIG 351 Query: 360 ASGARLVTTALNQLECSGGRYALCTMCIGVGQGIALVIER 399 ASG R++ T L+++ + L ++CIG G G+AL +ER Sbjct: 352 ASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 266 bits (681), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 173/409 (42%), Positives = 230/409 (56%), Gaps = 29/409 (7%) Query: 3 ALICDAIRTPFGRYG-GALGAMRADDLAAAPIRSLMERNPGVDWSRVDDILYGCANQAGE 61 A I A RTP G+ G R DDL I+S + + PG+D ++D + GC+ G Sbjct: 8 AYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFPEGA 67 Query: 62 DNRNVARMAGLLAGLPIEVPGTTINRLCGSSLDAVGLAARAIKSGEVELMIAGGVESMTR 121 N+AR A LLAGLP + G TINR C S + A+ +AA I+ GE ++MIA G ESM+ Sbjct: 68 QGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAESMSM 127 Query: 122 APFVMGKAESAFSRSAAIFDTTIGWR-FVNPLMKAQYGIDSMPETAENVATDFRINRADQ 180 P +MG F +I F + + YG M TAE VA ++++R Q Sbjct: 128 VP-MMG------------FHPSININAFKDENVGMAYG---MGLTAEKVAQQWKVSREAQ 171 Query: 181 DAFALRSQQRWAAAQEAGFFAGEIAPLAIPQK-----KGDPLI----ITTDEHPRPDTTL 231 D F+L S Q+ AAQEAG FA E+ I ++ G+ + ++ DE PR D+ L Sbjct: 172 DEFSLASHQKAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADSNL 231 Query: 232 GTLSKLKGVVRPDGTVTAGNASGVNDGACALLLASPQAADRYRLQPRARVLGMATAGVAP 291 L+KLK V G+VTAGN+S +DGA AL++ S + ++ L P AR + A GV P Sbjct: 232 AALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVPP 291 Query: 292 RIMGFGPAPAARKVLAQVGLTLAQMDVIELNEAFAAQGLAVTRELGLPDDAAHVNPNGGA 351 IMG GP A L GLT Q+D IELNEAFAAQ LAV +LGL D + VNP GGA Sbjct: 292 EIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGL--DPSKVNPMGGA 349 Query: 352 IAIGHPLGASGARLVTTALNQLECSGGRYALCTMCIGVGQGIALVIERV 400 IA+GHPLGA+GA T ++ L +Y + TMC+G G G A + ERV Sbjct: 350 IALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERV 398 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 229 bits (584), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 150/400 (37%), Positives = 222/400 (55%), Gaps = 13/400 (3%) Query: 4 LICDAIRTPFGRYGGALGAMRADDLAAAPIRSLMERN--PGVDWSRVDDILYGCANQAGE 61 +I A RT G + GAL + A L A I + ++R ++++ + GC QAG Sbjct: 7 VIVSAARTAMGSFQGALADLPAPHLGAVAISAALQRAQLSAAQIAQIEQVWMGCVLQAGL 66 Query: 62 DNRNVARMAGLLAGLPIEVPGTTINRLCGSSLDAVGLAARAIKSGEVELMIAGGVESMTR 121 + AR A L AGLP V T+N++CGS++ AV L +I +G +++AGG+ESM+ Sbjct: 67 -GQAPARQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESMSN 125 Query: 122 APFVMGKAESAFSRSAAIFDTTIGWRFVNPLMKA---QYGIDSMPETAENVATDFRINRA 178 AP+++ KA + D + F++ L A QY M AE+ A++F RA Sbjct: 126 APYLLPKARRGYRLG---HDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASEFGFTRA 182 Query: 179 DQDAFALRSQQRWAAAQEAGFFAGEIAPLAIPQKKGDPLIITTDEHPRPDTTLGTLSKLK 238 QDAFA++S R A G F E+ P+ + KKG ++I+ DE P L ++ LK Sbjct: 183 QQDAFAVQSTLRARQAISGGGFDWEVVPVDVAGKKGS-VVISQDEGPMA-VNLERIATLK 240 Query: 239 GVVRPDGTVTAGNASGVNDGACALLLASPQAADRYRLQPRARVLGMATAGVAPRIMGFGP 298 DGTVTA N+S ++DGA ALLL AA + L P AR+LG A+ AP P Sbjct: 241 PAFSVDGTVTAANSSSISDGAAALLLMRESAALKQGLTPLARILGHASYAGAPEKFPTAP 300 Query: 299 APAARKVLAQVGLTLAQMDVIELNEAFAAQGLAVTRELGLPDDAAHVNPNGGAIAIGHPL 358 RK+ A+ GL A D+ E+NEAFA +A +REL + D +N +GGA A+GHP+ Sbjct: 301 IGVLRKIFAKTGLDAASTDLFEINEAFAVVPMAASRELDI--DMEKINVHGGACALGHPI 358 Query: 359 GASGARLVTTALNQLECSGGRYALCTMCIGVGQGIALVIE 398 GASGAR++ + L L+ G + + ++CIG G+ A+ +E Sbjct: 359 GASGARIIVSLLGALKARGLKTGIASLCIGGGEATAIALE 398 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,314,387 Number of extensions: 58254 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 6 Length of query: 401 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 314 Effective length of database: 1,207,925 Effective search space: 379288450 Effective search space used: 379288450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)