BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3992.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313411|ref|YP_003777503.1| phenylacetic acid degradation p...   656   0.0  

>gi|300313411|ref|YP_003777503.1| phenylacetic acid degradation
           protein [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/328 (94%), Positives = 324/328 (98%)

Query: 1   MYAQLVETGLTKVRSIEDMSPEEQAFQARIDAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60
           MYAQ+VETGL+KVR ++DMSPEE+AFQARI+AGVKIEPKDWMPEAYRKTLVRQISQHAHS
Sbjct: 1   MYAQMVETGLSKVRGLDDMSPEERAFQARIEAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60

Query: 61  EIVGQLPEGNWVTRAPTLERKAILLAKIQDEAGHGLYLYSAAETLGVSRDDLLAELHAGR 120
           EIVGQLPEGNWVTRAPTL+RKAIL+AKIQDEAGHGLYLYSAAETLGVSRDDLL ELHAGR
Sbjct: 61  EIVGQLPEGNWVTRAPTLQRKAILMAKIQDEAGHGLYLYSAAETLGVSRDDLLDELHAGR 120

Query: 121 AKYSSIFNYPAISWADMGAIGWLVDGSAIINQIPLCRCSFGPYSRAMVRVCKEESFHARQ 180
           AKYSSIFNYPA+SWADMGAIGWLVDGSAIINQIPLCRCS+GPYSRAMVRVCKEESFHARQ
Sbjct: 121 AKYSSIFNYPALSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ 180

Query: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDADSVNSAQSMQWRIKLFSNDEL 240
           GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDA+SVNSAQSMQWRIKLFSNDEL
Sbjct: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL 240

Query: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNAERGRYDFGAIDWDEFNNVVRGNGPCNRERLAT 300
           RQRMVDQTIPQIEYLGLTVPDPDLKWN ERGRYDFGAI+WDEF+NV+RGNGPCNRERLAT
Sbjct: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFGAINWDEFHNVLRGNGPCNRERLAT 300

Query: 301 RKKAYDDGAWFRDALVAHADKRAARKAA 328
           RKKAYDDGAWFRDALVAHADKRA RKAA
Sbjct: 301 RKKAYDDGAWFRDALVAHADKRATRKAA 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,053,592
Number of extensions: 44635
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)