BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3991.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313410|ref|YP_003777502.1| carbonic anhydrase/acetyltransf...   361   e-101
gi|300311056|ref|YP_003775148.1| carbonic anhydrase/acetyltransf...   106   1e-24
gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily ca...    65   3e-12

>gi|300313410|ref|YP_003777502.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 200

 Score =  361 bits (927), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/200 (87%), Positives = 187/200 (93%)

Query: 1   MPCYSIEGVIPVVDASAYVHPTAVLIGDVIVGPDCYVGPAACLRGDFGRIVLQRGANVQD 60
           MPCYSIEGVIPVVD SAYVHPTAVLIGDVIVGPDCYVGP ACLRGDFGRIVLQRGANVQD
Sbjct: 1   MPCYSIEGVIPVVDPSAYVHPTAVLIGDVIVGPDCYVGPTACLRGDFGRIVLQRGANVQD 60

Query: 61  TCVIHGFPAHETVVEENGHIGHGAVLHSCTVKRDALVGMNAVVMDEAIVGEQAIVAACAF 120
           TCVIHGFP H+TVVEENGHIGHGAVLHSCTV+RDALVGMNAVVMDEA+VGEQAIVAACAF
Sbjct: 61  TCVIHGFPGHDTVVEENGHIGHGAVLHSCTVRRDALVGMNAVVMDEAVVGEQAIVAACAF 120

Query: 121 VRAGMQIAPRSLVAGVPAKVVRELSAEELAWKQAGTRTYHDLARRSLHSLREVSPLRELD 180
           VRAGMQI PR+L AG+PAKVVREL+A+E+AWKQAGTRTY DL  R L SLREVSPL +++
Sbjct: 121 VRAGMQIPPRTLAAGLPAKVVRELTADEMAWKQAGTRTYQDLTVRCLASLREVSPLSQIE 180

Query: 181 ANRPALAAPLVEPLIAAKRA 200
            NRPALAAP VEPLIAA+RA
Sbjct: 181 ENRPALAAPFVEPLIAARRA 200


>gi|300311056|ref|YP_003775148.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 174

 Score =  106 bits (265), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 98/174 (56%)

Query: 1   MPCYSIEGVIPVVDASAYVHPTAVLIGDVIVGPDCYVGPAACLRGDFGRIVLQRGANVQD 60
           M  Y +E  IP +  +A+V  ++ ++G V +     V     +RGD   I +   +NVQ+
Sbjct: 1   MAIYQLEQDIPEIHDTAFVAESSTVVGKVKMEAHSSVWFNVAIRGDNELITIGENSNVQE 60

Query: 61  TCVIHGFPAHETVVEENGHIGHGAVLHSCTVKRDALVGMNAVVMDEAIVGEQAIVAACAF 120
             V+H    +  V+ +N  +GH A+LH CT+   AL+G+ AVV++ A +G+  +V A A 
Sbjct: 61  GAVLHTDVGYPMVIGKNVTVGHQAMLHGCTIGEGALIGIQAVVLNGAKIGKNCLVGAGAL 120

Query: 121 VRAGMQIAPRSLVAGVPAKVVRELSAEELAWKQAGTRTYHDLARRSLHSLREVS 174
           V  G +    SL+ G PAK VR+LS E++A  +AGT +Y   A++    L+ ++
Sbjct: 121 VTEGKEFPDNSLIIGAPAKAVRQLSEEDIARMRAGTDSYVQRAQQFKAKLKRIA 174


>gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily
           carbonic anhydrase/acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 186

 Score = 65.1 bits (157), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 21/177 (11%)

Query: 11  PVVDASAYVHPTAVLIGDVIVGPDCYVGPAACLR-------GDFGRIVLQRGANVQDTCV 63
           P V  SAYV  TA+L G VIV  + ++GP A +R       G+   I++   +N+QD  V
Sbjct: 11  PQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIGAHSNIQDGVV 70

Query: 64  IHGFPAHETVVEENGHIGHGAVLHS-CTVKRDALVGMNAVVMDEAI-----VGEQAIVAA 117
           IH        + E   I H A++H  CTV  DA +G N+V+ + +I     V   A+V  
Sbjct: 71  IHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLFNCSIGAGCVVRHNAVVDG 130

Query: 118 CA-----FVRAGMQIAPRSLVAGVPAKVVRELSAEELAWKQAGTRTYHDLARRSLHS 169
           C      +V +  +I  ++ ++ +P   V   +A E +   A T     L  + L +
Sbjct: 131 CDLPPGFYVPSTERIGAKTDLSTIPRVTV---AASEFSEDVARTNNELVLGYKKLQN 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 684,919
Number of extensions: 29039
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)