BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3985.p (278 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC t... 479 e-137 gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC t... 293 1e-80 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 290 1e-79 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 218 6e-58 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 214 6e-57 >gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 479 bits (1234), Expect = e-137, Method: Compositional matrix adjust. Identities = 241/263 (91%), Positives = 252/263 (95%) Query: 1 MMTAATVMNPAPSQAEVRATTAPVLLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPN 60 MMTAATVM A ++ EVRATTAPVLL+V+GLSARYGKVAALTD ALSLRAGQIVTVIGPN Sbjct: 1 MMTAATVMPHASAEPEVRATTAPVLLEVSGLSARYGKVAALTDTALSLRAGQIVTVIGPN 60 Query: 61 GAGKSTLLNAMMGAMPAGAAASGRILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAV 120 GAGKSTLLNAMMGA+P+GAAASGRI FQGEDVSQMEVEERVARGLSLVPEKRELFT+M V Sbjct: 61 GAGKSTLLNAMMGALPSGAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTV 120 Query: 121 EDNLLLGAYKRRRNGESGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMA 180 EDNLLLGAYKR RNGESGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMA Sbjct: 121 EDNLLLGAYKRHRNGESGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMA 180 Query: 181 KPQVLMLDEPSLGLAPLITKEILSIISQLRSTGVATLLVEQNARAALQVADHGYVLEMGE 240 KPQVLMLDEPSLGLAPLIT+EILSIISQLRSTGVATLLVEQNARAALQVAD+GYVLEMGE Sbjct: 181 KPQVLMLDEPSLGLAPLITREILSIISQLRSTGVATLLVEQNARAALQVADYGYVLEMGE 240 Query: 241 MVCEGPAGVLAADRKIVESYLGV 263 +VC GPAGVLA D +IVESYLGV Sbjct: 241 IVCAGPAGVLAEDSRIVESYLGV 263 >gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 293 bits (750), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 146/243 (60%), Positives = 187/243 (76%), Gaps = 4/243 (1%) Query: 24 VLLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASG 83 ++L V L A YGKV AL D L L G I TVIGPNGAGKSTLLNA+MG +PA G Sbjct: 4 LVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPA----QG 59 Query: 84 RILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQ 143 + +QG V + +E+RV G++LVPE+RELF++M+VEDNLLLG ++R R ++ LDQ Sbjct: 60 TVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQL 119 Query: 144 DFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEIL 203 V+ LFPRLKERR Q AGTLSGGERQMLA+GRA+MAKPQ+LMLDEPSLGLAP I KEIL Sbjct: 120 ATVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEIL 179 Query: 204 SIISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLGV 263 I+S+LR+ G++ LLVEQNARAALQ AD+GYVLE+G++ +G + LA D +++++YLG Sbjct: 180 HIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGF 239 Query: 264 ARE 266 ++ Sbjct: 240 GKK 242 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 290 bits (741), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 150/240 (62%), Positives = 184/240 (76%), Gaps = 4/240 (1%) Query: 25 LLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGR 84 +L+V LSA YGKV L LS+ G+IVTVIGPNGAGK+TLL+A+MG +P+ G Sbjct: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPS----RGA 60 Query: 85 ILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQD 144 + F G EVEE VA G++LVPEKRELF M +EDNL+LGA++R R G+ + + Sbjct: 61 MAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLE 120 Query: 145 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILS 204 VYTLFPRL+ERR Q AGTLSGGERQMLAVGRALMAKP++LMLDEPSLGLAPLI +EI Sbjct: 121 EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 Query: 205 IISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLGVA 264 II++LR GV+ LLVEQNARAALQVAD+GYVLE G + GPA LA DR+++E+YLG++ Sbjct: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS 240 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 218 bits (554), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 115/240 (47%), Positives = 163/240 (67%), Gaps = 8/240 (3%) Query: 24 VLLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASG 83 ++LQ + YG + AL +L++ G+IVT+IG NGAGK+TLL + G P A+SG Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGR-PR--ASSG 57 Query: 84 RILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNG-ESGYLDQ 142 R++F+G+D++Q++ E + RGL++ PE R +F S+ V +NL +GA+ E G Sbjct: 58 RVIFEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGI--- 114 Query: 143 QDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEI 202 ++V+ LFPRLKER Q AGT+SGGE+QMLA+GRALM+KP++L+LDEP+LGLAPL+ +I Sbjct: 115 -EYVFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQI 173 Query: 203 LSIISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLG 262 II +R +GV LVEQNA AL VAD GYVLE G +V L A+ + ++YLG Sbjct: 174 FDIIRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 214 bits (545), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 156/238 (65%), Gaps = 5/238 (2%) Query: 25 LLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGR 84 +LQV L+ YG + A+ +LSL G+I ++G NGAGKST L A+ G + A GR Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKA---QRGR 66 Query: 85 ILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQD 144 +L G+D+ QM V G+ V E R T++ VE+NL LGAY R+ + G + Sbjct: 67 VLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKD--KDGVARDLE 124 Query: 145 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILS 204 +VY+LFP LK R AG LSGGE+QMLA+GRALMAKP+VL+LDEPS+GLAPLI +EI Sbjct: 125 WVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFR 184 Query: 205 IISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLG 262 I+ ++ TG+ LLVEQN R AL++A GYVLE G++V E L + K+VE+YLG Sbjct: 185 IVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 757,601 Number of extensions: 29134 Number of successful extensions: 539 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 365 Number of HSP's successfully gapped: 137 Length of query: 278 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 194 Effective length of database: 1,222,130 Effective search space: 237093220 Effective search space used: 237093220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)