BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3982.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918...    69   2e-13
gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760...    66   2e-12
gi|300310795|ref|YP_003774887.1| hypothetical protein Hsero_1463...    60   1e-10
gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411...    57   1e-09
gi|300309625|ref|YP_003773717.1| hypothetical protein Hsero_0283...    56   2e-09

>gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918
          [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score = 69.3 bits (168), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 6  FIVMGDRTSHGGVVMSGDPTWTVDGQPIARIGDKVICPRCKRVATINSSRFPTIMDHGQP 65
          FI +GD+TSHGG V+SGD ++ + G+ +A IGD   CPRCK    I S     ++ +G+ 
Sbjct: 5  FITVGDKTSHGGTVISGDQSFLIHGKAVASIGDLTTCPRCKGTFAITSGA-EDMITNGKA 63

Query: 66 VVYDQDVTDCGAILYS 81
             D D T CGAIL +
Sbjct: 64 PARDGDRTACGAILIA 79


>gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760
          [Herbaspirillum seropedicae SmR1]
          Length = 85

 Score = 65.9 bits (159), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 6  FIVMGDRTSHGGVVMSGDPTWTVDGQPIARIGDKVICPRCKRVATINSSRFPTIMDHGQP 65
           IV+GD+TSHGG V+       V G+ +AR+GDKV CPR    +T  +S  PT++  G P
Sbjct: 5  VIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCPR--HGSTTIASGDPTMIIDGAP 62

Query: 66 VVYDQDVTDCGAILYSRH 83
          V  D D T CGA+L +  
Sbjct: 63 VARDGDKTACGAVLIASQ 80


>gi|300310795|ref|YP_003774887.1| hypothetical protein Hsero_1463
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 19/152 (12%)

Query: 5   GFIVMGDRTSHGGVVMSG--DPTWTVDGQPIARIGDKVICPRCK-RVATINSSRFPTIMD 61
           G   +GD+TSHGG+VM+G    TW   G   AR+GD V CP+C     TI+ +   ++  
Sbjct: 13  GMSWLGDKTSHGGIVMTGFRQSTWN-GGIAQARLGDIVFCPKCAPHRHTISQASGMSVF- 70

Query: 62  HGQPVVYDQDVTDCGAILYSRHNNHAGWGSPDEDSITNEPPEQTAPRQAPRFQEHFVLSN 121
            G     + D+T CGA+L +            E +   E     A      F + +VL  
Sbjct: 71  -GVRSALEGDITSCGAVLLA------------ERAAPKELTAAQAFMDGAGFDDRYVLL- 116

Query: 122 NTTGELLAGVPYLIKTGDGRTVEGETDAQGRT 153
           ++ G+ +    Y  +T DG    G TD  GRT
Sbjct: 117 DSNGQPMPHTYYACQTQDGEIEYGTTDDAGRT 148


>gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411
          [Herbaspirillum seropedicae SmR1]
          Length = 87

 Score = 56.6 bits (135), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 7  IVMGDRTSHGGVVMSGDPTWTVDGQPIARIGDKVICPRCKRVATI-----NSSRFPTIMD 61
          I +GD+TSHGG V+S   T    G+ +A  GD   CP+CK    I     NS+R      
Sbjct: 10 IRLGDKTSHGGEVISASDTLKAMGKGVALEGDMTTCPKCKGQFAIQPGGGNSTR----KH 65

Query: 62 HGQPVVYDQDVTDCGAILYS 81
          HG+ V Y  D T CGA L +
Sbjct: 66 HGKQVAYHGDTTTCGASLIA 85


>gi|300309625|ref|YP_003773717.1| hypothetical protein Hsero_0283
          [Herbaspirillum seropedicae SmR1]
          Length = 87

 Score = 55.8 bits (133), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 42/81 (51%)

Query: 5  GFIVMGDRTSHGGVVMSGDPTWTVDGQPIARIGDKVICPRCKRVATINSSRFPTIMDHGQ 64
          G I + D TSHGG V+S D    V G+ +AR+GD+  CP    V  +     PTI   G 
Sbjct: 3  GVIRLEDPTSHGGKVVSADARVAVRGKAVARVGDRCSCPVQGHVGCVIVEGHPTIEIDGI 62

Query: 65 PVVYDQDVTDCGAILYSRHNN 85
           V +D     CGA+L S  +N
Sbjct: 63 AVAFDGHRISCGAVLISTLSN 83


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 698,605
Number of extensions: 30683
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 5
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)