BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3979.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1...   526   e-150
gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum...    95   8e-21
gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1...    60   2e-10

>gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  526 bits (1354), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/288 (89%), Positives = 274/288 (95%)

Query: 12  IRYSIAGDEHLFAEVSEAMSLEAFFRAMAITRAVEQLALPGVLDVCLANASFQIRFNPDL 71
           IRYSIAGDEHLFAEVSE+MSLEAFFRAMAITRAVE+LALPGVLDVCLANASFQIRFNPDL
Sbjct: 12  IRYSIAGDEHLFAEVSESMSLEAFFRAMAITRAVEKLALPGVLDVCLANASFQIRFNPDL 71

Query: 72  IHPLELLEQVKALEASTTAERRIQTRIIEIPVLYDDPWTNETQARFRDRHQDPSSTDLQY 131
           IHPL LLEQ++ALE+STTAERRI TRIIE+PVLYDDPWTNETQ+RFRDRHQDPSSTDLQY
Sbjct: 72  IHPLALLEQLEALESSTTAERRIDTRIIEVPVLYDDPWTNETQSRFRDRHQDPSSTDLQY 131

Query: 132 AARINGHADVAAFIAAHSGSPWFVSMVGFVAGLPFMFQMVEQHQQLQVPKYLRPRTDTPK 191
           AARING+ +  AFIAAHSG+PWFVSMVGFVAGLPFM+QMVEQ +QLQVPKYLRPRTDTPK
Sbjct: 132 AARINGYDETQAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDTPK 191

Query: 192 LTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQALPYLQESMVFFRAGDIVQFKPIT 251
           LTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQ LPYL+ESMVFFRAGDIVQFKPI 
Sbjct: 192 LTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLRESMVFFRAGDIVQFKPID 251

Query: 252 RTDYDAAIAAVDAGRFDLRIRPASFDLDAFQADPKACIHALKEALHDD 299
           RT YDAAI  V+AGRFDLRIR   FDLDAFQADP+ACIHALKEALHDD
Sbjct: 252 RTAYDAAIVEVEAGRFDLRIRAVRFDLDAFQADPQACIHALKEALHDD 299


>gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum
            seropedicae SmR1]
          Length = 1207

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 16   IAGDEHLFAEV-SEAMSLEAFFRAMAITRAVEQLALPGVLDVCLANASFQIRFNPDLIHP 74
            ++GD +L  EV S  + L   FR  A+  A+E+ ALPGV+D+     S Q+ + P+ +  
Sbjct: 805  LSGDANLLLEVGSPQLDLVLRFRVHALITALEEQALPGVIDLTPGIRSLQVHYQPEALPL 864

Query: 75   LELLEQVKALEASTTAERR--IQTRIIEIPVLYDDPWTNETQARFRD--RHQDP-SSTDL 129
              LL+ +  L  +  A     + +RI+ +P+ +DDP       ++    R   P   ++L
Sbjct: 865  PTLLQTIAGLWDAVCASENLTVSSRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNL 924

Query: 130  QYAARINGHADVAAFIAAHSGSPWFVSMVGFV-AGLPFMFQMVEQHQQLQVPKYLRPRTD 188
            ++  RIN   D+ A       + + V  +G V  G P    +  +H+ L   KY   RT 
Sbjct: 925  EFIRRINDLKDIGAVRETVFDASYLVMGLGDVYLGAPVATPLDPRHR-LVTTKYNPARTW 983

Query: 189  TPKLTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQALPYLQESMVFFRAGDIVQFK 248
            T + ++G GG + CIY + G GGYQ  G T   +++  + +   +      R  D ++F 
Sbjct: 984  TAENSVGIGGAYLCIYGMEGPGGYQFVGRT-LQMWNRYREVAAFRGKPWLLRFFDQIRFY 1042

Query: 249  PITRTDYDAAIAAVDAGRFDLRIRPASFDLDAFQ 282
            P+T  +          GRF++ I     +L  +Q
Sbjct: 1043 PVTAEELQTIRRDFPLGRFEVGIEETQLNLADYQ 1076


>gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 28/174 (16%)

Query: 75  LELL-EQVKALEASTTAERRIQTRIIEIPVLYDDPWTNETQARFRDRHQDPSSTDLQYAA 133
           LE+L  +++      + ER +  R +EIPV+Y                   +  DL   A
Sbjct: 63  LEILAHRIETTWPKLSGERSVG-RTVEIPVVYGGS----------------AGPDLDNVA 105

Query: 134 RINGHADVAAFIAAHSGSPWFVSMVGFVAGLPFMFQMVEQHQQLQVPKYLRPRTDTPKLT 193
           R  G       IA HS + + V  +GF+ G  +M  +      L  P++  PR   P  +
Sbjct: 106 RHTG-LSTEEVIARHSNAEYVVYFLGFLPGFAYMGGL---DASLATPRHTTPRVSIPAGS 161

Query: 194 LGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQALPYLQESMVFFRAGDIVQF 247
           +G GG    +Y +   GG+Q+ G T   ++DP Q  P L       R GD V+F
Sbjct: 162 VGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQEPPTL------LRPGDRVRF 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 951,182
Number of extensions: 39688
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)