BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3973.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313366|ref|YP_003777458.1| GTP-binding protein [Herbaspiri...   721   0.0  
gi|300309707|ref|YP_003773799.1| GTPase [Herbaspirillum seropedi...    71   2e-13

>gi|300313366|ref|YP_003777458.1| GTP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/362 (98%), Positives = 360/362 (99%)

Query: 1   MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP 60
           MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP
Sbjct: 1   MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP 60

Query: 61  ERILPAAVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS 120
           ERILPA VEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS
Sbjct: 61  ERILPATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS 120

Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA 180
           PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA
Sbjct: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA 180

Query: 181 LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTNNPLLDQLTAYAQEQNAPIVAICAAI 240
           LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFT+NPLLDQLTAYA+EQNAPIVAICAAI
Sbjct: 181 LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTDNPLLDQLTAYAKEQNAPIVAICAAI 240

Query: 241 EAEIADLDDADKADFLADMGMEEPGLDRLIRAAFKLLGLQTYFTAGVKEVRAWTIPVGAT 300
           EAEIADLDDADKADFLADMGMEEPGLDRLIRAAF+LLGLQTYFTAGVKEVRAWT+PVGAT
Sbjct: 241 EAEIADLDDADKADFLADMGMEEPGLDRLIRAAFRLLGLQTYFTAGVKEVRAWTVPVGAT 300

Query: 301 GPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGEAGAKEAGKMRAEGKEYVVKDGDVMNFL 360
           GPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGEAGAKEAGKMRAEGKEYVVKDGDVMNFL
Sbjct: 301 GPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGEAGAKEAGKMRAEGKEYVVKDGDVMNFL 360

Query: 361 FN 362
           F 
Sbjct: 361 FT 362


>gi|300309707|ref|YP_003773799.1| GTPase [Herbaspirillum seropedicae
           SmR1]
          Length = 369

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 22/137 (16%)

Query: 6   GIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKPERILP 65
           G++G+PN GKST   A++ A     +YPF T+ PN+G+V V   +   +A          
Sbjct: 163 GLLGMPNAGKSTFITAVSNARPKIADYPFTTLHPNLGVVRVSHEKSFVIA---------- 212

Query: 66  AAVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVSPLDDI 125
                 DI GL+ GA+ G GLG QFL H++ T  ++++V      ++      V P+ + 
Sbjct: 213 ------DIPGLIEGAADGAGLGVQFLRHLQRTGLLLHIV------DLAPFNEEVDPVKEA 260

Query: 126 AVIQTELALADMGTVEK 142
             I  EL   D    +K
Sbjct: 261 KAIVQELKKYDQSLFDK 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 995,759
Number of extensions: 39939
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)