BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3972.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC... 470 e-134 gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC... 160 1e-40 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 157 1e-39 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 140 8e-35 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 139 2e-34 >gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 470 bits (1210), Expect = e-134, Method: Compositional matrix adjust. Identities = 231/243 (95%), Positives = 241/243 (99%) Query: 25 MDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEVDGENVPSLATKQLYLLRRKMG 84 MDFPRGKVVAVMGGSGSGKTTILRLIGGQL+PQQG+VEVDGENVP LATKQL+LLRRKMG Sbjct: 1 MDFPRGKVVAVMGGSGSGKTTILRLIGGQLRPQQGKVEVDGENVPDLATKQLFLLRRKMG 60 Query: 85 MLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDLVLMKLNAVGLRNAAALKPAEISGG 144 MLFQNGALFTDMTVFDNVAFPLREHTDLD+TLIRDLVLMKLNAVGLRNAA+LKPAEISGG Sbjct: 61 MLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLMKLNAVGLRNAASLKPAEISGG 120 Query: 145 MARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNES 204 MARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNES Sbjct: 121 MARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNES 180 Query: 205 FAIADYVYFLSAGKIVAQGTPQEMRESTDPYVKQFVHAQADGPVPFHYPGKSLAEDLGLG 264 FAIAD+VYFLSAGKIVAQGTP+E+R STDPYV+QFVHA+ADGPVPFHYPGKSLAEDLGLG Sbjct: 181 FAIADHVYFLSAGKIVAQGTPEELRSSTDPYVRQFVHAEADGPVPFHYPGKSLAEDLGLG 240 Query: 265 GGA 267 GGA Sbjct: 241 GGA 243 >gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 1/239 (0%) Query: 4 IVEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEV 63 I+E+R L ++G + + L + RG+++ V+GGSG+GK+ +LR I G L+P G V V Sbjct: 19 IIEVRGLRNQFGTQVVHEQLDLQVRRGEILGVVGGSGTGKSVLLRSIVGLLRPAAGEVRV 78 Query: 64 DGENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDLVLM 123 G+++ +L+++ R+ G+LFQ GALF+ +TV +N+A PL E+ L+ R + M Sbjct: 79 FGQDLTALSSEARSGYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNADEARGVAAM 138 Query: 124 KLNAVGLRNAAALK-PAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTANL 182 KL GL AA K PA +SGGM +R ALARA+ALDP ++ DEP AGLDPIS L Sbjct: 139 KLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRL 198 Query: 183 IRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEMRESTDPYVKQFVH 241 I L DALG T LV+HD++ +AI D + LS+ +++ + + D +++Q+ Sbjct: 199 ILTLRDALGLTVFLVTHDLDTLYAICDRIAVLSSRRVLVADRIEAVAAYDDAWIRQYFQ 257 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 139/240 (57%), Gaps = 9/240 (3%) Query: 5 VEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEVD 64 +E+ + R+G L + ++FP G++ A++G SG GKTT+LR+I G P G+V +D Sbjct: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 Query: 65 GENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLR---EHTDLDDTLIRDLV 121 GE+ + ++ R++G +FQ+ ALF MTVF+N+AF LR + +IR+ V Sbjct: 63 GEDASARHVRE-----RQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKV 117 Query: 122 LMKLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTAN 181 L V L A P ++SGG +R+ALARA+A++P +++ DEPF LD Sbjct: 118 KRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 182 LIRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEM-RESTDPYVKQFV 240 +RRL+D L TSI V+HD E+ +AD V ++ G++ GTP+ + P+V F+ Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFL 237 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 140 bits (354), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 135/235 (57%), Gaps = 8/235 (3%) Query: 5 VEIRDLHFRYGD----RPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGR 60 + + DLH YG PIL G+ M+ RG+VVA++G SGSGKTT+LR + G P+ G Sbjct: 4 LSVNDLHLDYGTGAHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGA 63 Query: 61 VEVDGENVPSLATK-QLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLR-EHTDLDDTLIR 118 +++ V A ++ R +G++FQ+ AL+ TV DNVA+ L+ T + R Sbjct: 64 IDIGKRRVFDGARNFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATR 123 Query: 119 DLVLMKLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGV 178 V L+ +GL + P ++SGG +RVA+ARA+ +P +I+ DEP + LD Sbjct: 124 --VKAVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREE 181 Query: 179 TANLIRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEMRESTD 233 +R L LG ++++V+HD E+ AI+D + L+ G+I QGTPQ M ++ + Sbjct: 182 ARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPN 236 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 133/227 (58%), Gaps = 5/227 (2%) Query: 4 IVEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEV 63 IV+I+DLH +G +L G+ +D +G++VA++G SGSGK+T+LR + G + G ++V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 64 DGENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDLVLM 123 G ++ L LR+++G++FQ+ LF +TV N+ L + + + Sbjct: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHK 123 Query: 124 KLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLI 183 L VGL N P ++SGG A+RVA+AR++A+ P L+++DE + LDP +TA ++ Sbjct: 124 VLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDP---ELTAEVL 180 Query: 184 RRLNDAL--GSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEM 228 + + D G T +LV+H++ + +AD + F+ G++ G P E+ Sbjct: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDEL 227 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 869,011 Number of extensions: 36863 Number of successful extensions: 542 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 141 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)