BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3971.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC...   432   e-122
gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC...    93   2e-20

>gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score =  432 bits (1111), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/259 (93%), Positives = 250/259 (96%)

Query: 1   MIVNAVSALGRSVREFAVGVGFAARMFINMLGASLGLLRRPRLITDQIHFIGNYSLVIIT 60
           MI   VS LGRS+REF VGVGFA RMF +MLG+SLGLLRRPRLITDQIHFIGNYSLVII 
Sbjct: 1   MIAGLVSGLGRSLREFVVGVGFAGRMFASMLGSSLGLLRRPRLITDQIHFIGNYSLVIIA 60

Query: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120
           VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI
Sbjct: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120

Query: 121 GLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVISMPVLAAIFSAVGVMGGYVVGVLLIGV 180
           GLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVI+MPVLAAIFSAVGV+GGYVVGVLLIGV
Sbjct: 121 GLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVIAMPVLAAIFSAVGVIGGYVVGVLLIGV 180

Query: 181 DDGAFWSQMQGGVDVWNDVANGVLKSVVFGVAVTFVALFQGYEAQPTPEGVARATTRTVV 240
           D+GAFWSQMQGGVDVWND+ANGVLKSVVFGVAVTFVALFQGYEA+PTPEGVARATTRTVV
Sbjct: 181 DEGAFWSQMQGGVDVWNDIANGVLKSVVFGVAVTFVALFQGYEAKPTPEGVARATTRTVV 240

Query: 241 IASLTVLGLDFLLTALMFS 259
           IASL VLGLDFLLTALMFS
Sbjct: 241 IASLLVLGLDFLLTALMFS 259


>gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score = 92.8 bits (229), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 114/212 (53%), Gaps = 2/212 (0%)

Query: 47  QIHFIGNYSLVIITVSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTAL 106
           QI   G  ++ I+++    VG V+   G   L  +G+      LVA S  RE   ++TA+
Sbjct: 166 QIEQTGLDAVPIVSLLTFMVGAVVAFLGATVLANFGASIYTVDLVAFSFLREFAVLLTAI 225

Query: 107 LFAGRAGTSLTAEIGLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVISMPVLAAIFSAVG 166
           L AGR  +S TA+IG MKA E++ A+  + ++P++ +V PR  A +++MP L  I    G
Sbjct: 226 LMAGRTASSFTAQIGSMKANEEIDAIRALGLDPIKLLVLPRLIALLVAMPALTFIAMLSG 285

Query: 167 VMGGYVVGVLLIGVDDGAFWSQMQGGVDVWNDVANGVLKSVVFGVAVTFVALFQGYEAQP 226
           + GG +V  L + +    F S +Q  V + + +  G++K+ +F   V  +   +G++   
Sbjct: 286 LFGGAMVCALSLDISPTMFLSLLQQDVGIRHFIL-GMVKAPLFAFVVAVIGCNEGFKVSG 344

Query: 227 TPEGVARATTRTVVIASLTVLGLDFLLTALMF 258
           + + V + TT +VV +   V+ LD  L AL F
Sbjct: 345 SAQSVGQHTTSSVVQSIFVVILLD-ALAALFF 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 668,942
Number of extensions: 23707
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)