BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3963.p
         (416 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313357|ref|YP_003777449.1| UDP-N-acetylglucosamine 1-carbo...   793   0.0  
gi|300313784|ref|YP_003777876.1| UDP-N-acetylglucosamine enolpyr...   171   8e-44

>gi|300313357|ref|YP_003777449.1| UDP-N-acetylglucosamine
           1-carboxyvinyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 416

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/416 (93%), Positives = 406/416 (97%)

Query: 1   MDKLLIRGGQRLSGDLTISGAKNAALPILCAGLLTDGDLVLSNVPHLQDVITITRLMKQM 60
           MDKLLIRGG+RLSGD+TISGAKNAALPILCA LLT  DLVLSNVPHLQDV+TIT LMKQM
Sbjct: 1   MDKLLIRGGKRLSGDVTISGAKNAALPILCAALLTADDLVLSNVPHLQDVVTITGLMKQM 60

Query: 61  GLRVRENGEHLVLNGNDITRPEAPYELVKTMRASILVLGPLLARFGQAKVSLPGGCAIGS 120
           GLRV+ENG+ +VLNGNDITRPEAPYELVKTMRASILVLGPLLARFGQAKVSLPGGCAIGS
Sbjct: 61  GLRVQENGDQMVLNGNDITRPEAPYELVKTMRASILVLGPLLARFGQAKVSLPGGCAIGS 120

Query: 121 RPVDQHIKGLQAMGAEIHIEAGYIHARAKRLKGARIVTDMITVTGTENLLMAAALAEGET 180
           RPVDQHIKGLQAMGAEIHIE GYI+A+AKRLKGARIVTDMITVTGTENLLMAA LA+GET
Sbjct: 121 RPVDQHIKGLQAMGAEIHIEGGYIYAKAKRLKGARIVTDMITVTGTENLLMAAVLADGET 180

Query: 181 VLENAAREPEVGDLANLLVKMGAKIEGIGTDRLVIQGVDKLHGAEHEVIADRIETGTFLC 240
           VLENAAREPEVGDLANLLVKMGAKIEGIGTDRLVIQGV++LHGA HEVIADRIETGTFLC
Sbjct: 181 VLENAAREPEVGDLANLLVKMGAKIEGIGTDRLVIQGVEQLHGASHEVIADRIETGTFLC 240

Query: 241 AVAATGGDVTLHRTRAGLLDAALDKLREAGAILTSGEDWIRIQMARRPKAVSFRTTEYPG 300
           AVAATGGDVTL RTRAGLLDAALDKLR+AGAILTSGEDWIRIQMARRPKAVSFRTTEYPG
Sbjct: 241 AVAATGGDVTLRRTRAGLLDAALDKLRDAGAILTSGEDWIRIQMARRPKAVSFRTTEYPG 300

Query: 301 FPTDMQAQFMALNCLAEGTSHVTETIFENRFMHVQELNRLGAAIDVEGNTAIVTGVEKFL 360
           FPTDMQAQFMALNC+A+GTSHVTETIFENRFMHVQELNRLG AIDVEGNTAIVTGVEKF+
Sbjct: 301 FPTDMQAQFMALNCIADGTSHVTETIFENRFMHVQELNRLGTAIDVEGNTAIVTGVEKFI 360

Query: 361 GAPVMATDLRASASLVIAGLAAQGETVVERIYHLDRGYDRMEAKLSAIGADIERIK 416
           GAPVMATDLRASASLVIAGLAAQGETVVERIYHLDRGYDRMEAKLSAIGADI+RIK
Sbjct: 361 GAPVMATDLRASASLVIAGLAAQGETVVERIYHLDRGYDRMEAKLSAIGADIQRIK 416


>gi|300313784|ref|YP_003777876.1| UDP-N-acetylglucosamine
           enolpyruvyl transferase [Herbaspirillum seropedicae
           SmR1]
          Length = 433

 Score =  171 bits (434), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 206/438 (47%), Gaps = 29/438 (6%)

Query: 1   MDKLLIRGGQRLSGDLTISGAKNAALPILCAGLLTDGDLVLSNVPHLQDVITITRLMKQM 60
           M  L++ GG+ L GD+  S  KNA LPILCA LLTD  L L  +P + DV  I  + + +
Sbjct: 1   MSNLIVHGGRPLRGDIIPSANKNAVLPILCATLLTDQPLRLIGIPEITDVKKILEIFRVL 60

Query: 61  GLRVRENGEH--LVLNGNDITRPEAPYELVKTMRASILVLGPLLARFGQAKVSLP-GGCA 117
           G  V  +     L L+  D       + L + MR+SI+++ PLLARFG A++     GC 
Sbjct: 61  GSEVTVDYASGVLELHHRDTHFDPKLHHLPEEMRSSIMLVPPLLARFGVARLENDVKGCT 120

Query: 118 IGSRPVDQHIKGLQAMGAEIHIEAGYIHARAK-RLKGARIVTDMITVTGTENLLMAAALA 176
           +G R +D H++  Q  GA++      +  R   R++      D  +VT TEN ++ AA A
Sbjct: 121 LGVREIDPHVEVFQRFGAQVESSPDSLIIRTPGRMQANDHWLDYASVTTTENFVLCAASA 180

Query: 177 EGETVLENAAREPEVGDLANLLVKMGAKIEGIGTDRLVIQGVDKLHGAEHEVIADRIETG 236
           EG +VL NAA EP V +    +  +G +IEG+GT R+ ++G   L G E     D  E  
Sbjct: 181 EGTSVLTNAASEPHVQEFCRFMAMLGVQIEGLGTSRVSVRGGGPLGGGEFRFDEDFHEIA 240

Query: 237 TFLCAVAATGGDVTLHRT---RAGLLDAALDKLREAGAILTSGEDWIRIQMARRPKAVSF 293
           TFL   A TGG V +  +   +  L+D    K    G  +     W   +     K V  
Sbjct: 241 TFLAMGAITGGQVRVRNSAPQQFPLIDRTFAKF---GVEVVHENGWSHTRQNGPLKVVKP 297

Query: 294 RTTE---------YPGFPTDMQAQFMALNCLAEGTSHVTETIFENRFMHVQELNRLGAAI 344
            T+          +P  P D+   F+AL   AEG +     I++       EL++ GA +
Sbjct: 298 FTSNILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHV 357

Query: 345 DVEGNTAIVTGVEKFLGAPVMATD------LRASASLVIAGLAAQGETVVERIYHLDRGY 398
            +     ++T    F G P+          +R + +L +   + +G + +     + R +
Sbjct: 358 FLGDPHRLIT----FGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAH 413

Query: 399 DRMEAKLSAIGADIERIK 416
            +    L ++GA ++ ++
Sbjct: 414 PKFVENLRSLGAVVDWVE 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,312,515
Number of extensions: 57761
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,203,190
Effective search space: 394646320
Effective search space used: 394646320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)