BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3960.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313354|ref|YP_003777446.1| DNA-methyltransferase [Herbaspi...   543   e-156

>gi|300313354|ref|YP_003777446.1| DNA-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  543 bits (1399), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 262/276 (94%), Positives = 268/276 (97%), Gaps = 3/276 (1%)

Query: 1   MTSATDSLAGAGWLDRVYCEDALDAGGGLARIPDGSVDLLIADPPYGLGKDYGNDSDKLD 60
           M+SATDSLAGAGWLDRV+CEDAL A GGLARIPDGSVDL+IADPPYGLGKDYGNDSDKLD
Sbjct: 1   MSSATDSLAGAGWLDRVFCEDALSAVGGLARIPDGSVDLMIADPPYGLGKDYGNDSDKLD 60

Query: 61  TAAYLAWTEQWVDAVLPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSM 120
           TAAYLAWTEQWVDA LPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSM
Sbjct: 61  TAAYLAWTEQWVDAALPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSM 120

Query: 121 GGSVRRYSSVHDTIGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPK 180
           GGS RRYSSVHDTIGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPK
Sbjct: 121 GGSTRRYSSVHDTIGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPK 180

Query: 181 DVWSVSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGR 240
           DVWSVSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGR
Sbjct: 181 DVWSVSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGR 240

Query: 241 HFTGFELNPDYCELIRQRLDAIDAPAPASQDDESLQ 276
           HFTGFELNPDYCELIRQRLDA+   APA QDDE+L+
Sbjct: 241 HFTGFELNPDYCELIRQRLDAL---APAHQDDEALR 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,001,255
Number of extensions: 44197
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)