BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3959.p (368 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans... 629 0.0 gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans... 132 5e-32 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 61 1e-10 gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 59 8e-10 >gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 629 bits (1623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/372 (84%), Positives = 345/372 (92%), Gaps = 4/372 (1%) Query: 1 MNPS----KPETVDDLVANVIRPVVRGWHSYHVPSAAGLVKLDAMENPYVLPVALREELA 56 M PS +PE++D L+ANVIRPVVRGW SYHVPSA G+VKLDAMENPY+LP LRE+LA Sbjct: 1 MKPSVPKPEPESIDQLIANVIRPVVRGWQSYHVPSAEGMVKLDAMENPYLLPAELREQLA 60 Query: 57 QRLAALELNRYPVPSYTQLKAAICECLGVPAGYEVLLGNGSDELITMLSVACAMPGRTIV 116 QRLAALELNRYPVPSYT LKAAIC+ LGVPAGY+VLLGNGSDELIT+LSVACA PGRTI+ Sbjct: 61 QRLAALELNRYPVPSYTALKAAICKGLGVPAGYDVLLGNGSDELITLLSVACAQPGRTIL 120 Query: 117 APEPGFVMYGISAQMAGLDYVGVPLRADLSLDLPAMLAAIETHKPVITWLGYPNNPTGTL 176 APEPGFVMYG+SA+MAGL+YVGVPL ADLSLDLPAMLAA+E HKPVITWLGYPNNPTGTL Sbjct: 121 APEPGFVMYGVSAKMAGLEYVGVPLCADLSLDLPAMLAAMEAHKPVITWLGYPNNPTGTL 180 Query: 177 YEMADVLRIIEAAAPYGLVVVDEAYQPFATSTLMPALPRHNNLVVMRTVSKLGLAGVRLG 236 YEMADVLRI+EAAAPYGLVVVDEAYQPFA STLMPALP+HNNLV+MRTVSKLGLAG+RLG Sbjct: 181 YEMADVLRIVEAAAPYGLVVVDEAYQPFAASTLMPALPQHNNLVLMRTVSKLGLAGIRLG 240 Query: 237 YLSAAPALLRELDKVRPPYNVNVLTEAAVLFVLDHLHVLESQAARLRAARSDLASALAAL 296 YLSAAPALLRELDKVRPPYNVNVLTEAA LF+L+HL VL++QAARLR ARS LA+ LAAL Sbjct: 241 YLSAAPALLRELDKVRPPYNVNVLTEAAALFMLEHLDVLQAQAARLRQARSALAAELAAL 300 Query: 297 DGVQVFPSAANFILIRVPDADKVFAGLLARKVLVKNAGRMHMLLQNCLRITVSSDEENAI 356 DGVQVFPSAANF+LIRVPDADKV A LLA +VLVKNAGRMH+LLQNCLRITVSSD+ENA+ Sbjct: 301 DGVQVFPSAANFLLIRVPDADKVCASLLAHRVLVKNAGRMHVLLQNCLRITVSSDKENAM 360 Query: 357 FLTALTAALREL 368 FL AL ALREL Sbjct: 361 FLAALKTALREL 372 >gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 360 Score = 132 bits (331), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 114/352 (32%), Positives = 169/352 (48%), Gaps = 31/352 (8%) Query: 30 PSAAGLVKLDAMENPYVLPVALREELAQRLAALELNRYPVPSYTQLKAAICE---CLGVP 86 P A LVKL+ E+PY P L + R + L YP P LK AI GV Sbjct: 21 PKIARLVKLNTNESPYG-PSPLALQAIAREVSDSLRLYPNPDAEPLKQAIARRHAADGVS 79 Query: 87 AGYEVLLGNGSDELITMLSVACAMPGRTIVAPEPGFVMYGISAQMAGLDYVGVPLRADLS 146 EV +GNGSDE++ A G+ I+ P+ + Y A + ++Y VPL D + Sbjct: 80 V-REVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTYAGLYQVEYRAVPLAEDFT 138 Query: 147 LDLPAMLAAIETHKPVITWLGY--PNNPTGTLYEMADVLRIIEAAAPYGLVVVDEAYQPF 204 L L H I + + PN PTG L +ADV RI++ P +VVVDEAY F Sbjct: 139 LRSEDYLG----HGQAIGGIIFPNPNAPTGCLLGLADVERILQ-GNPERVVVVDEAYIDF 193 Query: 205 ATSTLMPALPRHNNLVVMRTVSK-LGLAGVRLGYLSAAPALLRELDKVRPPYNVNVLTEA 263 + +P + R+ NL+V++T+SK LAG+R+G+ L+ L++V+ +N L Sbjct: 194 GGQSAIPLVQRYPNLLVVQTLSKSRALAGMRVGFAVGHADLIDALERVKNSFNSYPLDRP 253 Query: 264 AV---LFVLDHLHVLESQAARLRAARSDLASALAALDGVQVFPSAANFILIRVPDADKVF 320 A+ ++ + A+R+ LA+ LA L G QV PSAANF+ +R P D Sbjct: 254 AIAGATAAIEDEDYFRKTCNMVIASRTALAAQLAGL-GFQVLPSAANFLFVRHPQHDAAQ 312 Query: 321 A-------GLLARKVLVKNAGRMHMLLQNCLRITVSSDEENAIFLTALTAAL 365 G++ R + + LRIT+ +DE+ + + AL L Sbjct: 313 LAAALRADGIIVRHFKSER-------ISQFLRITIGTDEDCGVLVEALRRHL 357 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 9/186 (4%) Query: 71 SYTQLKAAICECLG---VPAGYE-VLLGNGSDELITMLSVACAMPGRTIVAPEPGFVMYG 126 Y L+ I + LG + G E VL +G+ + + ++ PG T++ +PG+ Sbjct: 161 GYAPLRQLITQFLGHWSLELGIEQVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLI 220 Query: 127 ISAQMAGLDYVGVPLRADLSLDLPAMLAAIETHKPVITW-LGYPNNPTGTLYEMADVLRI 185 ++AGL+ +GVP R +D + TH P + + NPTGT Y A +R+ Sbjct: 221 AMLRLAGLNVIGVP-RTPGGVDTDVLETLARTHHPKMFFTTSVLQNPTGTSYTPACAMRV 279 Query: 186 IEAAAPYGLVVV-DEAYQPF--ATSTLMPALPRHNNLVVMRTVSKLGLAGVRLGYLSAAP 242 ++AA +G VV D+ ++ AT ++ AL ++ + + SK +R+GY++ Sbjct: 280 LQAAERHGFWVVEDDIFRELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQR 339 Query: 243 ALLREL 248 L R++ Sbjct: 340 ELARQI 345 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 11/255 (4%) Query: 90 EVLLGNGSDELITMLSVACAMPGRTIVAPEPGFVMYGISAQMAGLDYVGVPLRADLSLDL 149 E ++ GS E + L +A G T++ P P + ++ A +AG + V + + Sbjct: 131 EAIVTIGSKEGLAHLMLATLDKGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFD 190 Query: 150 PAMLAAIETH-KPVITWLGYPNNPTGTLYEMADVLRIIEAAAPYGLVVV------DEAYQ 202 A E++ KP + LG+P+NPT E+ R+++ A + ++VV D + Sbjct: 191 ELERAVRESYPKPKMMILGFPSNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFD 250 Query: 203 PFATSTLMPALPRHNNLVVMRTVSK-LGLAGVRLGYLSAAPALLRELDKVRPPYNVNVLT 261 + ++M V T+SK +AG R+G++ L+ L +++ ++ T Sbjct: 251 GWKAPSIMQVPGAREVAVEFFTLSKSYNMAGWRIGFMVGNARLVAALARIKSYHDYGSFT 310 Query: 262 E---AAVLFVLDHLHVLESQAARLRAARSDLASALAALDGVQVFPSAANFILIRVPDADK 318 AA+ + +E A R+ L L + P A+ +I R+P+ + Sbjct: 311 PVQVAAIAALEGDQSCVEEIRANYERRRNVLVKGLHEAGWMVDVPKASMYIWARIPEPYR 370 Query: 319 VFAGLLARKVLVKNA 333 F L ++L++ A Sbjct: 371 QFGSLEFARILLEQA 385 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,080,524 Number of extensions: 43298 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 5 Length of query: 368 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 281 Effective length of database: 1,207,925 Effective search space: 339426925 Effective search space used: 339426925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)