BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3957.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313351|ref|YP_003777443.1| glutamine amidotransferase [Her...   430   e-122
gi|300313488|ref|YP_003777580.1| glutamine amidotransferase [Her...   141   3e-35

>gi|300313351|ref|YP_003777443.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  430 bits (1106), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/212 (96%), Positives = 210/212 (99%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60
           MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL
Sbjct: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60

Query: 61  RESGVEDAVIEASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFELEGLRQDDG 120
           RESGV+DAVIEASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRF+LEG+RQDDG
Sbjct: 61  RESGVQDAVIEASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFDLEGMRQDDG 120

Query: 121 SLFKVPQMGWNHVHQTRTHPLWEGIADDAFFYFVHSYYAVPAETAHVVGQTPYGRDFACA 180
           SLFKVPQMGWNHVHQT  HPLWEGIAD+AFFYFVHSYYAVPAE+AHVVGQTPYGRDFACA
Sbjct: 121 SLFKVPQMGWNHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGRDFACA 180

Query: 181 VARDNIFATQFHPEKSASAGLQLYRNFVHWKP 212
           VARDNIFATQFHPEKSASAGLQLYRNFVHWKP
Sbjct: 181 VARDNIFATQFHPEKSASAGLQLYRNFVHWKP 212


>gi|300313488|ref|YP_003777580.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  141 bits (356), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 117/208 (56%), Gaps = 14/208 (6%)

Query: 4   IVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSLRES 63
           I +V+YGMGNL S+    + +  +A  RI  +   +R A+++VLPG GA    M  + E+
Sbjct: 2   ITIVNYGMGNLGSLLNMFKRIGVKA--RIESDPEAVRDAEKLVLPGVGAFDAAMHRINET 59

Query: 64  -GVEDAVIEASRTK--PLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRF-ELEGLRQDD 119
            G+  A+   +  +  P+ GVC+G Q+L   SEEG  PGLG + G+ +RF  ++GL    
Sbjct: 60  PGLRAALDHKALIERVPVIGVCLGMQLLTRSSEEGKLPGLGWIDGEAIRFPRIDGL---- 115

Query: 120 GSLFKVPQMGWNHVHQTRTHPLWEGIADDAFFYFVHSYYAVPAETAHVVGQTPYGRDFAC 179
               KVP MGWN  H      L   I  +  +YFVHSY+       H + +T YG +F  
Sbjct: 116 ----KVPHMGWNVAHPATPSALTNDIGIEPRYYFVHSYFVKVDNPVHSLMRTQYGVEFDS 171

Query: 180 AVARDNIFATQFHPEKSASAGLQLYRNF 207
           A+ RDNI+  QFHPEKS   G+++ +NF
Sbjct: 172 AIGRDNIYGAQFHPEKSHRFGMKILQNF 199


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 748,477
Number of extensions: 32218
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)