BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3956.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313350|ref|YP_003777442.1| phosphoribosylformimino-5-amino...   528   e-151
gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate sy...    99   3e-22
gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate syn...    69   5e-13

>gi|300313350|ref|YP_003777442.1|
           phosphoribosylformimino-5-aminoimidazole carboxamide
           ribonucleotide (ProFAR) isomerase [Herbaspirillum
           seropedicae SmR1]
          Length = 265

 Score =  528 bits (1360), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/265 (98%), Positives = 263/265 (99%)

Query: 1   MLLIPAIDLKDGHCVRLKQGDMEQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKP 60
           MLLIPAIDLKDGHCVRLKQGDM+QATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKP
Sbjct: 1   MLLIPAIDLKDGHCVRLKQGDMDQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKP 60

Query: 61  KNEAAVKSILQVVARFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120
           KNEAAVK+IL+ VA FAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP
Sbjct: 61  KNEAAVKAILKAVASFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120

Query: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGR 180
           GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGR
Sbjct: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGR 180

Query: 181 DGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDVEALCRVEDEGIEAVICGRSIYEGTL 240
           DGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDVEALCRVEDEGIEAVICGRSIYEGTL
Sbjct: 181 DGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDVEALCRVEDEGIEAVICGRSIYEGTL 240

Query: 241 DLRSGQDRADELTRELEANRLSGSK 265
           DLRSGQDRADELTRELEANRLSGSK
Sbjct: 241 DLRSGQDRADELTRELEANRLSGSK 265


>gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 21/220 (9%)

Query: 3   LIPAIDLKDGHCVR-LKQGDMEQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKPK 61
           +IP +D+  G  V+ +   ++  A     DP E+A  + +QGA  L  +D+  +  G+  
Sbjct: 7   IIPCLDVTAGRVVKGVNFLELRDAG----DPVEIARRYDEQGADELTFLDITASSDGR-- 60

Query: 62  NEAAVKSILQVVARFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNPG 121
                  IL ++   A +     IP+ +GGG+R ++ + R L+ G   + I T+AV NP 
Sbjct: 61  -----DLILDIIEAVASQ---VFIPLTVGGGVRAVEDVRRLLNAGADKVGINTSAVTNPQ 112

Query: 122 FLHDACSAFPGQ-IIVGLDAK---DGK--VATDGWSKLSGHEVVDLAQKFEGYGCEAIVY 175
            + DA S +  Q I+V +DAK   DGK  V T G  K +G + V+ A+K    G   I+ 
Sbjct: 113 LVADAASKYGSQCIVVAIDAKRAGDGKWEVYTHGGRKATGLDAVEWARKMAQLGAGEILL 172

Query: 176 TDIGRDGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDV 215
           T + RDG   G +++ T  +++AV+IP+IASGGV  + D+
Sbjct: 173 TSMDRDGTKSGFDLDLTRAVSEAVSIPVIASGGVGGLQDL 212


>gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 70  LQVVARFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNPGFLHDACSA 129
           LQ++A  A E     +P+  GGGIR LD        G   + + T A++NP  + +  + 
Sbjct: 63  LQLLADIANECF---MPLGYGGGIRSLDDARSVFSIGFEKVAVNTHALENPSLISEIATE 119

Query: 130 FPGQ-IIVGLDAKDG-----KVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGRDGM 183
           +  Q ++V +D K G      V +      +G + V  AQ+ E  G   +  T I R+G 
Sbjct: 120 YGSQAVVVSVDVKGGVLGGQTVRSHSGRHNTGRDPVAWAQEAERLGAGELFLTAIDREGT 179

Query: 184 MGGVNIEATVRLAQAVTIPIIASGGVHNVGDVEALCRVEDEGIEAVICGRSI 235
             G +I+   ++  AV+IP+IA GG  ++ D+  +  V+  G  AV  G  +
Sbjct: 180 WSGFDIDLVKKVTDAVSIPVIAHGGAGSLSDIRKV--VKQAGASAVALGSMV 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 859,999
Number of extensions: 37731
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 3
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)