BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3933.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311003|ref|YP_003775095.1| hypothetical protein Hsero_1674... 243 1e-65 gi|300310796|ref|YP_003774888.1| hypothetical protein Hsero_1464... 235 2e-63 gi|300312218|ref|YP_003776310.1| hypothetical protein Hsero_2913... 167 6e-43 >gi|300311003|ref|YP_003775095.1| hypothetical protein Hsero_1674 [Herbaspirillum seropedicae SmR1] Length = 259 Score = 243 bits (620), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 114/253 (45%), Positives = 162/253 (64%) Query: 1 MNENIHIQLGQSGDDILKKYPGRFVLSDHPSGAKFYVGKWTKGARGTIEVGPAETTFSVT 60 M + I++ QSG D++KKYP +F ++ +P G +FY W G++ + + ++ Sbjct: 1 MTAPVEIRVNQSGVDLVKKYPDQFEITKYPQGIQFYAADWGSVPNGSVVLATSAHNVTLP 60 Query: 61 QALSVTGNYSPSFPSENIIEWNINAGLGDSSTIMHEAARQQFRSILERLRKASWNRYIDP 120 LS TGN P+F SENII WNINAG+ ++ I H+ AR++F +L+ LR A W R I Sbjct: 61 YILSATGNDDPNFASENIINWNINAGITEADVIAHDDARKRFFGLLQSLRNAGWVRAIRL 120 Query: 121 DAPRLSGTEAIRYAQSVSSVYGLDPDYLPTLEEWMQLPGRTLWKFWSKDAYLTIALSRDL 180 PRL G +A+ Y Q + +Y LDPDY+ +LE+WM L R W +S AYL ++++RD Sbjct: 121 SEPRLKGKQALDYRQKENPIYSLDPDYVLSLEQWMTLDTRATWSLYSDHAYLDVSITRDP 180 Query: 181 SRDDVNQPGSYFVEFDLKSEKEQFRKLVGPGKRTTWQQELPAEMSLLKKDRQRAENDLRH 240 S+ DV +PG+YFVE+ LKS+ E++R +VGP KR W+ ELPA + L K RQ AE L+ Sbjct: 181 SKTDVTKPGAYFVEYALKSDNEKWRSVVGPTKRLHWKTELPAVLPQLAKSRQAAEETLKK 240 Query: 241 RGIKIDETYRDPP 253 I IDETYRDPP Sbjct: 241 ENITIDETYRDPP 253 >gi|300310796|ref|YP_003774888.1| hypothetical protein Hsero_1464 [Herbaspirillum seropedicae SmR1] Length = 254 Score = 235 bits (600), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 111/252 (44%), Positives = 159/252 (63%), Gaps = 1/252 (0%) Query: 1 MNENIHIQLGQSGDDILKKYPGRFVLSDHPSGAKFYVGKWTKGARGTIEVGPAETTFSVT 60 M E I I QSG +L +YP + L + P FY W + A GT++V + Sbjct: 1 MPETIEITPNQSGKALLARYPHQIKLLNRPPNVNFYSLDWPRNALGTVQVKTGNHVAVIK 60 Query: 61 QALSVTGNYSPSFPSENIIEWNINAGLGDSSTIMHEAARQQFRSILERLRKASWNRYIDP 120 L ++G+ P+F SE+I+EW++ AGL I H+ ARQ+F ++L+ +RKA W RY+ Sbjct: 61 DVLGISGSDDPNFASEDIVEWHVYAGLATEEEIPHDLARQRFLALLQEIRKAGWQRYVGR 120 Query: 121 DAPRLSGTEAIRYAQSVSSVYGLDPDYLPTLEEWMQLPGRTLWKFWSKDAYLTIALSRDL 180 PRL G+ A+RYA S S Y LDPDY +L+EWM +P T+W+F ++AYL + L+RD Sbjct: 121 GHPRLKGSTALRYALS-SRTYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDP 179 Query: 181 SRDDVNQPGSYFVEFDLKSEKEQFRKLVGPGKRTTWQQELPAEMSLLKKDRQRAENDLRH 240 R DVN+ G+YFV+ L E+ R++VGP +R WQ LP E+ LLK+DR+RAE LR Sbjct: 180 QRKDVNKKGAYFVKLSLNGANEEARRIVGPARRADWQAALPEELKLLKQDRERAEQVLRQ 239 Query: 241 RGIKIDETYRDP 252 +G+ IDE+Y+DP Sbjct: 240 QGVAIDESYQDP 251 >gi|300312218|ref|YP_003776310.1| hypothetical protein Hsero_2913 [Herbaspirillum seropedicae SmR1] Length = 284 Score = 167 bits (424), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 126/253 (49%) Query: 1 MNENIHIQLGQSGDDILKKYPGRFVLSDHPSGAKFYVGKWTKGARGTIEVGPAETTFSVT 60 M +I I+ + + + P + P+G FY+ +W G + + + + Sbjct: 28 MPSSIAIRANEPSKAFIDQAPSAIKVIKQPAGINFYLMQWGGAQLGDVHIHHGAASVQIP 87 Query: 61 QALSVTGNYSPSFPSENIIEWNINAGLGDSSTIMHEAARQQFRSILERLRKASWNRYIDP 120 + G FP E+I W I GL S + HE AR + +IL L K +W IDP Sbjct: 88 DVRVLQGEEDAQFPEEHIANWKIYIGLSSGSVMSHEQARNKIYAILAALEKKAWRVLIDP 147 Query: 121 DAPRLSGTEAIRYAQSVSSVYGLDPDYLPTLEEWMQLPGRTLWKFWSKDAYLTIALSRDL 180 D PRL+G E Y S GL+ DY+PTL+EWM+L + W F++ +LT+ + RD Sbjct: 148 DDPRLTGKERFDYVTGQSPASGLNIDYVPTLDEWMRLEDLSHWSFYADGVFLTVTMQRDQ 207 Query: 181 SRDDVNQPGSYFVEFDLKSEKEQFRKLVGPGKRTTWQQELPAEMSLLKKDRQRAENDLRH 240 DV++PG Y + +L E E FR V P RT W+ ELP+ L + R + E Sbjct: 208 GALDVSRPGHYILVLNLMGENEGFRAFVPPKARTNWRNELPSLWKALNERRTQREAQALV 267 Query: 241 RGIKIDETYRDPP 253 G KI+ +Y+DPP Sbjct: 268 AGKKINTSYQDPP 280 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 910,912 Number of extensions: 37951 Number of successful extensions: 87 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 3 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 130 (54.7 bits)