BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3930.p (904 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 1372 0.0 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 378 e-105 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 374 e-104 gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 361 e-100 gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 321 2e-88 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 1372 bits (3551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 690/894 (77%), Positives = 772/894 (86%), Gaps = 12/894 (1%) Query: 1 MNLPFPDSLSPVISALFGPGLSQHARLITLDSAQPDGLPESLVVERFHGQESVNDNFHFD 60 MNLP PDSL+ ++ LFG GLSQ+ARLIT+ +AQ GLPE+L VERF G+ESVNDNF FD Sbjct: 1 MNLPLPDSLTAAVTELFGTGLSQNARLITMTTAQSAGLPETLAVERFEGEESVNDNFRFD 60 Query: 61 IDALSVSTDLDLKQFIGTELTLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLESF 120 IDALS+STDLDLKQFIG E++LRLLQADG RAWHGYCTQASWLGADGGLARYRLRLESF Sbjct: 61 IDALSISTDLDLKQFIGAEISLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESF 120 Query: 121 LAFLERRHDSFLFQDMDVTEIASALFKEYPQANFALNVTQTLIKRDICTQYRESDFHFLR 180 LAFL+RRHDSFLFQDM VT+IA+A+ KEYPQANF+L VTQTL KRDICTQYRE+D+ FLR Sbjct: 121 LAFLDRRHDSFLFQDMTVTDIAAAVLKEYPQANFSLEVTQTLAKRDICTQYRETDYAFLR 180 Query: 181 RILALEGLNFRFEHQQESDDAGQQGQQGQQGQQQARHKLIIFDRQAKMPAIPGADDTIRF 240 RILA EGLNFRFEH+Q DDA QQ Q Q ARHKL+IFDR AK PA+PG D+ IRF Sbjct: 181 RILASEGLNFRFEHEQ--DDATQQHDQSQP---HARHKLVIFDRNAKAPALPGGDEYIRF 235 Query: 241 HRVAAMEASDAITDFSAVRSVQSNGVALASWHPEKISSPSAEESSSLDAGDLPLLPIYDG 300 HRVAAMEASDAITDF+AVRSV+ NGVALASWHPEK+SSPS EE S+LDAG+LP LP+YDG Sbjct: 236 HRVAAMEASDAITDFAAVRSVRPNGVALASWHPEKLSSPSHEEGSTLDAGELPSLPVYDG 295 Query: 301 TGQQDFADQDAAATHALLMLQALEMQNKRFEGAGAARQLAAGTQFSLRQHDHYPAGENRF 360 TGQQDFADQDAAA HA LMLQALEMQNKRFEGAGAARQLAAG +F+L QH+ YP GEN F Sbjct: 296 TGQQDFADQDAAAAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLLQHERYPEGENAF 355 Query: 361 KVLSVKHSARNNFEHNIARILDDILPDSAQI----SDISTDDELKAGTYRNRFTVVRDAV 416 KV+SV+H+ARNN NI RIL P + + + DD+L+AGTYRN FT +RD+V Sbjct: 356 KVVSVRHAARNNVSANITRIL---APAAGALFGGSAAAERDDDLQAGTYRNSFTAIRDSV 412 Query: 417 PILPTAITQRLKPTSRGTQTALVTGLPGTAVTTDRNHRVKVQFHWQRGQSPNPGGLRDTG 476 P++P AI +RLKPT+RGTQTALVTG AVTTDRNHRVKVQFHWQRG+SPNPGGLR+TG Sbjct: 413 PMVPAAIAERLKPTARGTQTALVTGAADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETG 472 Query: 477 NLDDKQGNAPGNDASGTWVRVAEAQSGPNWGSQFTPRIGSEVLIDFIEGDIDRPVVVAQL 536 NLDDK GNA GND+SGTW+RVAEAQSGPNWGSQF PR+GSEVL+DFIEGDIDRPVVVAQL Sbjct: 473 NLDDKDGNANGNDSSGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQL 532 Query: 537 YNGNDTPPFPAGADSGVNHAGTISGWHSLSHDGSGFNQWVVDDTQSQLRMRLASSQARSQ 596 YNG+D PPFPAGADSG+NHAG+ISGWHS +HDGSGFNQWVVDDTQSQLRMRLASS A+SQ Sbjct: 533 YNGSDAPPFPAGADSGINHAGSISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASSTAKSQ 592 Query: 597 LNLGHLIDQADSGAQRGNYRGQGFELRSDAWGVVRGENGLLLSATARPAAGASVTGTQMD 656 LNLGHL++QAD+GAQRG+YRGQGFELRSDAWGVVRG GLLLS TARP GASVTGTQMD Sbjct: 593 LNLGHLVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMD 652 Query: 657 ATEAIAQLKGASELANNMGDAATQQQALHSAAAFQAKSDFIAAIDPADQGKHPASVNGQE 716 A AIAQLKGA LA M D+ATQQQAL S A QAK+DF+A IDP+DQGKHPASVNGQ+ Sbjct: 653 AAGAIAQLKGAKSLAQTMSDSATQQQALSSTQALQAKTDFLALIDPSDQGKHPASVNGQD 712 Query: 717 AFKTKGELRQTDAAQPVEKFAKATVLMESPTNINWASAASTLLYAGESLHWTSQGDTHWS 776 A K+ G R TDAAQPVEKFAKA VLM+SP++INW S ASTLLYA E+L WT+QGD HWS Sbjct: 713 ALKSDGSTRNTDAAQPVEKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQGDVHWS 772 Query: 777 AADTASLAAGKAATLFAHEGGIQVFAGNGPVSLQAHTDALEILADQQVSVTSVNDSIEIK 836 AADTAS AAGKAA+ ++H+GGIQ FA NGPVSLQAHTDALEILAD+ V+VTSVNDSIEIK Sbjct: 773 AADTASAAAGKAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIK 832 Query: 837 ARHKIVVQAGQSCVMLEDGNITFACPGTFSVKGAAHAFPGGASAAASLPPLPNS 890 AR KIV+QAGQ+ V LE GNITFACPGTFSVKGA HAFPGGAS + L LP++ Sbjct: 833 ARQKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDT 886 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust. Identities = 282/916 (30%), Positives = 447/916 (48%), Gaps = 114/916 (12%) Query: 3 LPFPDSLSP---------VISALFGPGLSQHARLITLDSAQPDGLPESLVVERFHGQESV 53 +PFP L P +SAL + Q R++ LDS P+ L+ +R G E + Sbjct: 1 MPFPVCLPPSSAMDNVLTTLSALADTFVGQEKRILKLDSVLG---PDVLLPQRMVGSERL 57 Query: 54 NDNFHFDIDALSVSTDLDLKQFIGTELTLRLLQADGSRRA-WHGYCTQASWLGADGGLAR 112 + + ID +S D++LK+ I +TL LQ DGS A HGY A LG+DG LA Sbjct: 58 GRGYDYTIDLVSTRDDIELKKLIAQPVTL-WLQQDGSDYAPLHGYVHTARRLGSDGQLAS 116 Query: 113 YRLRLESFLAFLERRHDSFLFQDMDVTEIASALFKE--YPQANFALNVTQTLIKRDICTQ 170 +++ + +L FL+ R D+ ++QD +I + +F + Y + N+ + + R CTQ Sbjct: 117 FQIGMAPWLHFLKYRKDARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQ 176 Query: 171 YRESDFHFLRRILALEGLNFRFEHQQESDDAGQQGQQGQQGQQQARHKLIIFDRQAKMPA 230 Y E+D+HF++R++ EG + H+Q+ D +G H L+I D + A Sbjct: 177 Y-ETDWHFVQRLMEEEG--WYAYHEQKPDGSG--------------HVLVITDNTDQ--A 217 Query: 231 IPGADDTIRFHRVAAMEASDAITDFSAVRSVQSNGVALASWHPEKISSPS----AEESSS 286 P A + + FH + + I +SA R + S +A + + SP +E Sbjct: 218 KPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTRLATRT---DDYKSPGDQKQTQERVL 274 Query: 287 LDAGDLP-LLPIYDGTGQQDFADQDAAATHALLMLQALEMQNKRFEGAGAARQLAAGTQF 345 + G LP L +Y+ +G +A QD A L ++ E KRF G AR LAAG F Sbjct: 275 PEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSGARTLAAGRWF 334 Query: 346 SLRQHDHYPAG---ENRFKVLSVKHSARNNFE-HNIARILDDILP---DSAQISDISTDD 398 +L H + +++F +++V+ NN AR L D+ + S ++D Sbjct: 335 TLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTARDFPGSLKPQLDAFKASMGRSND 394 Query: 399 EL----KAGTYRNRFTVVRDAVPILPTAITQRLKPTSRGTQTALVTGLPGTAVTTDRNHR 454 + + G NRF V R +P + KP QTA+V G G V TD+ +R Sbjct: 395 DAGGNARTGHCFNRFEVQRRKLPY--RSPFDHTKPVMH-PQTAVVVGPQGEEVFTDKLNR 451 Query: 455 VKVQFHWQRGQSPNPGGLRDTGNLDDKQGNAPGNDASGTWVRVAEAQSGPNWGSQFTPRI 514 VKVQF W R PG++ + WVRV+ +G NWG PR+ Sbjct: 452 VKVQFRWDRIN--------------------PGDEKASCWVRVSYPNAGENWGEVKVPRV 491 Query: 515 GSEVLIDFIEGDIDRPVVVAQLYNGNDTPPFPAGADSGVNHAGTISGWHSLSHDGSGFNQ 574 G E++I F+ GD DRPV +L+N P + + G +SG S G+GFNQ Sbjct: 492 GQELIISFLNGDPDRPVATGRLFNQEQPPQW--------HTDGRLSGLKSKEFGGNGFNQ 543 Query: 575 WVVDDTQSQLRMRLASSQARSQLNLGHLIDQADSGAQRGNYRGQGFELRSDAWGVVRGEN 634 V+DDT SQ R+ L SSQ+ +QLNLG+L+ QAD+ +R N+ G GF L +D +G V + Sbjct: 544 LVMDDTTSQNRVHLYSSQSNAQLNLGYLVSQADN--ERRNFYGSGFALSTDDYGAVVTQK 601 Query: 635 GLLLSATARPAAGASVTGTQMDATEAIAQLKGASELANNMGDAATQQQALHSAAAFQAKS 694 GL LS+ RP GTQ+DA+EA + +K +++LA + D+A++ A A A + Sbjct: 602 GLYLSSYGRPGP----QGTQLDASEATSLMKASADLARGLSDSASRAGA--EALAQDSLK 655 Query: 695 DFIAAIDPADQGKHPASVNGQEAFKTKGELRQTDAAQPVEKFAKATVLMESPTNINWASA 754 DF+ A + G+ S N +F K ++M +P I A+ Sbjct: 656 DFVDATEDKYSGQGQGSAN---------------------RFKKPLLMMAAPAGIGLATD 694 Query: 755 ASTLLYAGESLHWTSQGDTHWSAADTASLAAGKAATLFAHEGGIQVFAGNGPVSLQAHTD 814 T +++ + TS DT ++ + + +LFA G+++FA G V +QA +D Sbjct: 695 QGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSD 754 Query: 815 ALEILADQQVSVTSVNDSIEIKARHKIVVQAGQSCVMLEDGNITFACPGTFSVKGAAHAF 874 L+++A++ + S + +EI A+ ++++ AG S + + IT PG + K + H+ Sbjct: 755 DLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSM 814 Query: 875 PGGASAAASLPPLPNS 890 PG AS +P + S Sbjct: 815 PGPASQNFVMPHVQKS 830 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust. Identities = 284/923 (30%), Positives = 423/923 (45%), Gaps = 130/923 (14%) Query: 21 LSQHARLITLDSAQPDGLPESLVVERFHGQESVNDNFHFDIDALSVSTDLDLKQFIGTEL 80 ++QH RL+ LDS+ P+ L+ +R E +ND + ID L+ T + L+Q I + Sbjct: 16 ITQHRRLLQLDSSLG---PDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPV 72 Query: 81 TLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLESFLAFLERRHDSFLFQDMDVTE 140 TL + Q DG HGY A LG+DG L +L L +L FL R D+ ++QD + Sbjct: 73 TLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTED 132 Query: 141 IASALFKEYPQA--NFALNVTQTLIKRDICTQYRESDFHFLRRILALEGLNFRFEHQQES 198 I + +F +PQA ++ + + R CTQY E+D+HF++R++ EG + H+Q Sbjct: 133 ILADVFNNHPQARGHYRFQLERPYTPRPYCTQY-ETDWHFVQRLMEEEG--WFAHHEQRE 189 Query: 199 DDAGQQGQQGQQGQQQARHKLIIFDRQAKMPAIPGADDTIRFHRVAAMEASDAITDFSAV 258 D +G H L+I D +P +P I FH A + D I +SA Sbjct: 190 DGSG--------------HVLVITDNTWNLPGLP--QQGIAFHGAAPRDELDKILHWSAS 233 Query: 259 RSVQSNGVALASWHPEKISSP----SAEESSSLDAGDLPL-LPIYDGTGQQDFADQDAAA 313 R++ S G S + SP AEE + G LP L +Y+ TG F Q+ Sbjct: 234 RTLSSKGWRGRS---DDYKSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGN 290 Query: 314 THALLMLQALEMQNKRFEGAGAARQLAAGTQFSLRQHDHY---PAGENRFKVLSVKHSAR 370 A L ++ E +R+ R LA G F L +H + P E +F +L++ Sbjct: 291 RQADLQVEQWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVE 350 Query: 371 NN---------FEHNIARILDDILPDSAQISDISTDDELKAGTYRNRFTVVRDAVPILPT 421 NN F ++ L + ++ D G NRF V R +P P Sbjct: 351 NNLPLSHQALDFPGSLKGALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPA 410 Query: 422 AITQR--LKPTSRGTQTALVTGLPGTAVTTDRNHRVKVQFHWQRGQSPNPGGLRDTGNLD 479 R + P QTA+V G V TD R+KVQF W R Sbjct: 411 RAHARPVMLP-----QTAIVVGPASEEVYTDHLDRIKVQFRWDRIN-------------- 451 Query: 480 DKQGNAPGNDASGTWVRVAEAQSGPNWGSQFTPRIGSEVLIDFIEGDIDRPVVVAQLYNG 539 PGN+A+ WVRV+ +G WG+ PRIG EV++ F+ GD DRPVV +L+N Sbjct: 452 ------PGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGDPDRPVVTGRLFNA 505 Query: 540 NDTPPFPAGADSGVNHAGTISGWHSLSHDGSGFNQWVVDDTQSQLRMRLASSQARSQLNL 599 P + + G +SG S G+GFNQ V+DDT Q R+ L S+ +QLNL Sbjct: 506 EQRPQW--------HTNGRLSGVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTHAQLNL 557 Query: 600 GHLIDQADSGAQRGNYRGQGFELRSDAWGVVRGENGLLLSATARPAAGASVTGTQMDATE 659 GHL+ Q +G +R ++ G GF L +DA+G + GL +S RP A GTQ+DA E Sbjct: 558 GHLVSQ--TGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGA----QGTQLDARE 611 Query: 660 AIAQLKGASELANNMGDAATQQQALHSAAAFQAKSDFIAAIDPADQGKHPASVNGQEAFK 719 A QLK + L+ + + A A G P + GQEA + Sbjct: 612 ATGQLKSGANLSRTLSETA------------------------AKAGAEP--LAGQEALR 645 Query: 720 TKGELRQTDAAQPVE----KFAKATVLMESPTNINWASAASTLLYAGESLHWTSQGDTHW 775 + Q D P + +F +A +L SP I + +AG + +S DT Sbjct: 646 DFIDATQADYEDPSQAQANRFQQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSI 705 Query: 776 SAADTASLAAGKAATLFAHEGGIQVFAGNGPVSLQAHTDALEILADQQVSVTSVNDSIEI 835 + + + + +LFA + GI++F+ G V +QA +D LE++A++ + S + +EI Sbjct: 706 AVGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEI 765 Query: 836 KARHKIVVQAGQSCVMLEDGNITFACPGTFSVKGAAHAFPGGASAA-------ASLP--- 885 +A+ ++++ AG S + L IT G + K HA PG + A A+LP Sbjct: 766 RAKEEVLITAGGSFIRLNASGITQGTSGAWEAKAGTHAMPGPTTLAYEMNKSSAALPFDE 825 Query: 886 ----PLPNSVVNVKNSRRFSFSR 904 P VKN RRF R Sbjct: 826 EFVLRWPYDQSPVKN-RRFEIVR 847 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust. Identities = 288/937 (30%), Positives = 444/937 (47%), Gaps = 106/937 (11%) Query: 13 ISALFGPGLSQHARLITLDSA-QPDGLPESLVVERFHGQESVNDN------------FHF 59 + ALFG SQ AR++ L + D P +L+ ER E V + Sbjct: 6 LPALFG-AWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIAGYRL 64 Query: 60 DIDALSVSTDLDLKQFIGTELTLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLES 119 + LS++ D+ L++ +G + L L DG RA+HG+ T GA+GG+ARY L +E Sbjct: 65 QLSCLSLNADISLRKLLGQPVLLEL-DTDGGARAFHGHVTACRMEGANGGMARYLLTIEP 123 Query: 120 FLAFLERRHDSFLFQDMDVTEIASALFKEY-------PQANFALNVTQTLIKRDICTQYR 172 +L+FL R DS +FQDM I A+F +Y P L KR + TQY+ Sbjct: 124 WLSFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLATQYQ 183 Query: 173 ESDFHFLRRILALEGLNFRFEHQQESDDAGQQGQQGQQGQQQARHKLIIFDRQAKMPAIP 232 E+D F+ R++ EGL + EHQ +S+ A H ++I D P Sbjct: 184 ETDLAFVTRLMVEEGLFYYIEHQGDSNSA-----------SLGSHTVVIADHNGSFK--P 230 Query: 233 GADDTIRFHRVAAMEASDAITDFSAVRSVQSNGVALASWHPEKISSPSAEESSS-LDAGD 291 A T+ F + A+ A D I + +VR Q+N V + +W + + +A +SS +A D Sbjct: 231 NARSTVAFAQTNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASSGENAHD 290 Query: 292 LPLLPIYDGTGQQDFADQDAAATHALLMLQALEMQNKRFEGAGAARQLAAGTQFSL-RQH 350 +L D GQ + A AL +QA+E++NK F GAG R GT F+L + Sbjct: 291 KLVLTSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHY 350 Query: 351 DHYPAGENRFKVLSVKHSARNNFEHNIARILDDILPDSAQISD-----------ISTDDE 399 DH +++F +L V H A NN ++ + +L AQ+ D + + D Sbjct: 351 DHDGGDDDQFVLLRVVHQAHNNLSADLKAGVTALL-GQAQLDDHDHKGSLLDTALRSADT 409 Query: 400 LKAGTYRNRFTVVRDAVPILPTAIT---QRL--KPTSRGTQTALVTGLPGTAVTTDRNHR 454 YRNRF +R+ +P P + +RL KP + G Q+A+V G G AV TDR++R Sbjct: 410 QARPVYRNRFEAIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQAVHTDRDNR 469 Query: 455 VKVQFHWQRGQSPNPGGLRDTGNLDDKQGNAPGNDASGTWVRVAEA---QSGPNWGSQFT 511 ++VQFHWQRG+ + G + DD G AP N+ +GTWVRV +G NWG Q Sbjct: 470 IRVQFHWQRGERSHSG--LSSPTPDDHVG-APANEQAGTWVRVLAGLAPTAGANWGGQAV 526 Query: 512 PRIGSEVLIDFIEGDIDRPVVVAQLYNGN-------------------DTPPFPAGADSG 552 PR+G EVLIDFIEGDIDRPVV+ LYNG + P + G+ Sbjct: 527 PRVGQEVLIDFIEGDIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGA 586 Query: 553 VNHAGTISGWHSLS-----HDGSGFNQWVVDDTQSQLRMRLA----SSQARSQLNLGHLI 603 NHA +SG + + G G+NQ V DD+ Q R L + S+LNLG L Sbjct: 587 HNHAAVLSGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLR 646 Query: 604 DQADSGAQRGNYRGQGFELRSDAWGVVRGENGLLLSATARPAAGASVTGTQMDATEAIAQ 663 Q D+ QR GQGFEL++ +R GLL+S +A Q+D T+ ++Q Sbjct: 647 QQTDN--QRLATTGQGFELKTLYSAALRAGQGLLVSTEKSISA-------QLDMTQGLSQ 697 Query: 664 LKGASELANNMGDAATQQQALHSAAAFQAKSDFIAAID------PADQGKHPASVNGQEA 717 L +++ + + A + A + AK + A+ A Q S Sbjct: 698 LSESAQKQQQLAETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQ 757 Query: 718 FKTKGELRQTDAAQPVEKFAKATVLMESPTNINWASAASTLLYAGESLHWTSQGDTHWSA 777 + +A ++ + A + +P + A+ ++ + AG+ ++ +QG+ H+ + Sbjct: 758 GSSATTATTAFSAPQLQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLS 817 Query: 778 ADTASL-AAGKAA--TLFAHEGGIQVFAGNGPVSLQAHTDALEILADQQVSVTSVNDSIE 834 SL GKA+ + E G+ + A G VS+Q+ + + +Q++V SV + Sbjct: 818 KSGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVS 877 Query: 835 IKARHKIVVQAGQSCVMLEDGNITFACPGTFSVKGAA 871 + + + + A + + LE GNI PG + +A Sbjct: 878 VAGKQHVQLAAQGAWLRLEGGNIEVHGPGAMEFRASA 914 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 321 bits (822), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 299/1007 (29%), Positives = 437/1007 (43%), Gaps = 201/1007 (19%) Query: 28 ITLDSAQPDGLPESLVVERFHGQESVNDNFHFDIDALSVSTDLDLKQFIGTELTLRLLQA 87 ++L A P G L+VE F E ++ ++ LS+ L LK IG TL + Sbjct: 20 LSLGDAAPAG---ELLVEAFAASEGLHAVGLREVIVLSLDAGLRLKSLIGQRATLVTTLS 76 Query: 88 DGSRRAWHGYCTQASWLGADGGLARYRLRLESFLAFLERRHDSFLFQDMDVTEIASALFK 147 DGSR + G +A+ LG++GGLARYRLR+ ++ L + H+S ++QD V +I +F Sbjct: 77 DGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSRVWQDKTVIDIVEDVFA 136 Query: 148 EY-PQANFALN-----VTQTLIKRDICTQYRESDFHFLRRILALEGLNFRFEHQQESDDA 201 +Y P A + Q + R QYRES+ F+ R+LA EGL++R E ES DA Sbjct: 137 DYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAAEGLSWRVE---ESADA 193 Query: 202 GQQGQQGQQGQQQARHKLIIFDRQAKMPAIPG--------ADDTIRFHRVAAMEASDAIT 253 + H+L++F A P IRFH A E D+I Sbjct: 194 A------------SGHRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSIQ 241 Query: 254 DFSAVRSVQSNGVALASWHPEK-----ISSPSAEESSSLDAGDLPLLPIYDGTGQQDFAD 308 +A R++Q L S+ + S P+ E DA P L YD G + D Sbjct: 242 ALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDA---PRLESYDSPGLYAYTD 298 Query: 309 QDAAATHALLMLQALEMQNKRFEGAGAARQLAAGTQFSLRQ--------HDHYPAGENRF 360 A +A L L+A E +NK ++ R L GT+F+L D P ++ Sbjct: 299 AAEADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGPLGLSAAQDGAP---RQY 355 Query: 361 KVLSVKHSARNNFEHNIAR-----------ILDDIL---------------PDSAQI--- 391 VLSV NN + A +L+D + PDS Q+ Sbjct: 356 AVLSVMSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQ 415 Query: 392 SDIS-TDDELKAGTYRNRFTVVRDAV---PILPTAITQRL--KPTSRGTQTALVTGLPGT 445 +DI+ + + Y N F +R V P+L RL + T+RG+Q+A+V G G Sbjct: 416 TDIAGVIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGE 475 Query: 446 A-------VTTDRNHRVKVQFHWQRGQSPNPGGLRDTGNLDDKQGNAPGNDASGT-WVRV 497 + DR RV+++FHWQ NDA+ T WVRV Sbjct: 476 TSASSAGEIHCDRLGRVRIRFHWQ----------------------GRNNDAAATCWVRV 513 Query: 498 AEAQSGPNWGSQFTPRIGSEVLIDFIEGDIDRPVVVAQLYN------------------G 539 A+ + G QF PRIG EVL+ FIE DIDRPV+V LYN G Sbjct: 514 AQRAASGGAGMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGEGAAAPTPGGDTAQAG 573 Query: 540 NDTP--PFPAGADSGVNHAGTISG-----WHSLSHD-------------------GSGFN 573 +D P F + D + G ++G WH S D GSG+N Sbjct: 574 SDDPARAFTSATDLQASGQGNLAGGNAPTWHGGSQDSDGHGNTAAQWGIRSKEFGGSGYN 633 Query: 574 QWVVDDTQSQLRMRLASSQARSQLNLGHLIDQADSGAQRGNYRGQGFELRSDAWGVVRGE 633 Q V DDT +Q R++L ++Q+ S+LNLGHLI AD+ RG++RG G ELR+DA+G +R Sbjct: 634 QIVFDDTDAQGRIQLKTTQSGSELNLGHLIHTADN--YRGSFRGTGAELRTDAYGALRAG 691 Query: 634 NGLLLS-------ATARPAAGASVTGTQM------------DATEAIAQLKGASELANNM 674 G+L S A +R AG +V G + +AT + AS L Sbjct: 692 GGILFSSYKIEQNAASRDPAGDNVGGMALLKQAALLGKTFNEATLTHKTVGLASHLGPTQ 751 Query: 675 GDAATQQQALHSAAAFQAKSDFIAAIDPADQGKHPASVNGQEAFKTKGELRQTDAAQPVE 734 A+T + A + + + P + G A+ N Q GE + + Sbjct: 752 ASASTINDSAAPLEAIRVAASGMVDGSPENSGADVAAANTQ-----TGESK-------LP 799 Query: 735 KFAKATVLMESPTNINWASAASTLLYAGESLHWTSQGDTHWSAADTASLAAGKAATLF-- 792 A + + + + + L GE+++ S D+ A + L +G+A + Sbjct: 800 HSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVAGNQYRLRSGQALGVLAG 859 Query: 793 -----AHEGGIQVFAGNGPVSLQAHTDALEILADQQVSVTSVNDSIEIKARHKIVVQ-AG 846 G+Q+ A + +QA D L + A QV V S N ++ A KI + AG Sbjct: 860 AMAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVISANAGVDWAAAKKITLSTAG 919 Query: 847 QSCVMLEDGNITFACPGTFSVKGAAHAFPGGASAAASLPPLPNSVVN 893 + + +E GNIT CPG ++ A F G S LP +PNSV Sbjct: 920 GANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQMPNSVCK 966 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,749,216 Number of extensions: 116918 Number of successful extensions: 405 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 338 Number of HSP's successfully gapped: 9 Length of query: 904 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 810 Effective length of database: 1,174,780 Effective search space: 951571800 Effective search space used: 951571800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)