BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3928.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313327|ref|YP_003777419.1| hypothetical protein Hsero_4040...   851   0.0  
gi|300310073|ref|YP_003774165.1| hypothetical protein Hsero_0738...   807   0.0  

>gi|300313327|ref|YP_003777419.1| hypothetical protein Hsero_4040
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/448 (90%), Positives = 433/448 (96%)

Query: 1   VNHSNKVLWGEGLFLRPQHFQRQDHYHETRLHQTALALNPYCWGVSSLQVDRDALNNNTL 60
           +N SNKVLWGEGLFLRPQHFQRQDHYHE RLHQTAL LNP+CWG+SSL+VD D+LNNNTL
Sbjct: 1   MNQSNKVLWGEGLFLRPQHFQRQDHYHEARLHQTALTLNPFCWGISSLKVDHDSLNNNTL 60

Query: 61  RILELSAIFQDGEIYKAPDGDDLPDPIELAEIPLSQQSVTFYAALPALKSFGSNFATGTG 120
           RILELSAIFQDGEIYKAPDGDDLPDPIEL EIPLSQQSVTFYAALP LKSFGSNFA+G  
Sbjct: 61  RILELSAIFQDGEIYKAPDGDDLPDPIELTEIPLSQQSVTFYAALPVLKSFGSNFASGVA 120

Query: 121 NHQSSRYIQDNVETPDLFTEAAKAEMSFLKKAVRLVSENEPRDSLVCIPIVRLRRASSSG 180
           NHQSSRYIQ N+ETPDLFT+AAKAE+S+LKKAVRL SE+EPRDSLVCIPIVRLRR+SSSG
Sbjct: 121 NHQSSRYIQHNIETPDLFTDAAKAELSYLKKAVRLASESEPRDSLVCIPIVRLRRSSSSG 180

Query: 181 FEMDPDFVAPSLSVHASPLLFQRLRRLLDALQAKVSALYGHHREPSKSVVEFRSGDITSF 240
           FE+DPDFVAPSLSVHA+PLLFQRLRRL+DALQAKVSALYGHHREPSK+VVEFRSGDITSF
Sbjct: 181 FELDPDFVAPSLSVHAAPLLFQRLRRLMDALQAKVSALYGHHREPSKNVVEFRSGDITSF 240

Query: 241 WLLHTASTAYAKLSHYLNHPQLHPERLYEQLLALAGSLMTFSRSLALADLPPYEHRDPGP 300
           WLLHTASTAYA+LSHYLN+P LHPERLYEQLLALAGSLMTFSRSL LADLPPYEHRDPGP
Sbjct: 241 WLLHTASTAYARLSHYLNNPLLHPERLYEQLLALAGSLMTFSRSLMLADLPPYEHRDPGP 300

Query: 301 PFARLDSIIRELLDTVISSRYFAIALHENKPSYHMGMLDSGKIDDKTSFYLAVNADLPAI 360
           PFARLD IIRELLDTVISSRYFAI LHE+KPSYHMGMLDSGKI++KT+FYLAVNADLPAI
Sbjct: 301 PFARLDGIIRELLDTVISSRYFAIVLHESKPSYHMGMLDSGKINEKTNFYLAVNADLPAI 360

Query: 361 ELVDVVPLRFKIGAPEDVEKFVLAALPGVKLVHSPQVPAALPVRPDTYYFTLESKGAMYE 420
           ELVDVVPLRFK+GAP+DVEKFVLAALPGVKLVHSPQVPAALPVRPDTYYFTLESKG MYE
Sbjct: 361 ELVDVVPLRFKVGAPDDVEKFVLAALPGVKLVHSPQVPAALPVRPDTYYFTLESKGPMYE 420

Query: 421 RMLQAQSICIYVPSGIRDLKLELLAVTQ 448
           RMLQAQS+CIYVPSGIR+LKLELLAVTQ
Sbjct: 421 RMLQAQSLCIYVPSGIRELKLELLAVTQ 448


>gi|300310073|ref|YP_003774165.1| hypothetical protein Hsero_0738
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/448 (88%), Positives = 424/448 (94%)

Query: 1   VNHSNKVLWGEGLFLRPQHFQRQDHYHETRLHQTALALNPYCWGVSSLQVDRDALNNNTL 60
           +NHSNKVLWGEGLFLRPQHFQRQD YHETRL QTA AL+PYCWGVS+LQVDRDALNNNTL
Sbjct: 1   MNHSNKVLWGEGLFLRPQHFQRQDLYHETRLRQTASALHPYCWGVSALQVDRDALNNNTL 60

Query: 61  RILELSAIFQDGEIYKAPDGDDLPDPIELAEIPLSQQSVTFYAALPALKSFGSNFATGTG 120
           RILELS IFQDGEIYKAPDGDDLPDPIEL EI L+QQSVTFYAALPA+KSFGSNFA   G
Sbjct: 61  RILELSLIFQDGEIYKAPDGDDLPDPIELGEIALTQQSVTFYAALPAMKSFGSNFAQAAG 120

Query: 121 NHQSSRYIQDNVETPDLFTEAAKAEMSFLKKAVRLVSENEPRDSLVCIPIVRLRRASSSG 180
            +QS+RY+ DN ETPDLFTEAAKAEMS+LKKAVRLVSENEPRDSLVCIPIVRLRR++SSG
Sbjct: 121 GNQSNRYLLDNSETPDLFTEAAKAEMSYLKKAVRLVSENEPRDSLVCIPIVRLRRSNSSG 180

Query: 181 FEMDPDFVAPSLSVHASPLLFQRLRRLLDALQAKVSALYGHHREPSKSVVEFRSGDITSF 240
           FEMDP+FV PSLSVHA+PLL  RLRRL+DALQAKVSALYGHHREPSKSVVEFRSGDITSF
Sbjct: 181 FEMDPNFVPPSLSVHAAPLLLLRLRRLMDALQAKVSALYGHHREPSKSVVEFRSGDITSF 240

Query: 241 WLLHTASTAYAKLSHYLNHPQLHPERLYEQLLALAGSLMTFSRSLALADLPPYEHRDPGP 300
           WLLHTASTAYA LSHYL++P LHPERLYEQLL L GSLMTFSRS+ALADLP Y+H+DPGP
Sbjct: 241 WLLHTASTAYASLSHYLHNPLLHPERLYEQLLTLGGSLMTFSRSVALADLPAYDHQDPGP 300

Query: 301 PFARLDSIIRELLDTVISSRYFAIALHENKPSYHMGMLDSGKIDDKTSFYLAVNADLPAI 360
            FARLD IIRELLDTVISSRYFAIAL+E KPSYH+GMLDSGKID+KT+FYLAVNADLPAI
Sbjct: 301 AFARLDGIIRELLDTVISSRYFAIALNETKPSYHLGMLDSGKIDEKTNFYLAVNADLPAI 360

Query: 361 ELVDVVPLRFKIGAPEDVEKFVLAALPGVKLVHSPQVPAALPVRPDTYYFTLESKGAMYE 420
           ELVDVVPLRFKIGAP+DVEKFVLAALPGVKLVHSPQVPAALPVRPDTYYF LE+KGAMYE
Sbjct: 361 ELVDVVPLRFKIGAPDDVEKFVLAALPGVKLVHSPQVPAALPVRPDTYYFALENKGAMYE 420

Query: 421 RMLQAQSICIYVPSGIRDLKLELLAVTQ 448
           RMLQAQSICIYVP+GIRDLKLELLAVTQ
Sbjct: 421 RMLQAQSICIYVPAGIRDLKLELLAVTQ 448


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,380,123
Number of extensions: 56524
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)