BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3926.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313325|ref|YP_003777417.1| lipoprotein [Herbaspirillum ser...   293   7e-81
gi|300310075|ref|YP_003774167.1| lipoprotein [Herbaspirillum ser...   284   4e-78

>gi|300313325|ref|YP_003777417.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 200

 Score =  293 bits (750), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 152/206 (73%), Positives = 168/206 (81%), Gaps = 6/206 (2%)

Query: 1   MRASKFKVGLIVPALLVLMLAGCANTQSKPSPEEEAKNTLENGVAQANTAQAEGKTDEAV 60
           MRASK  VGLIV A+LVL L GC N Q K +P ++AKN LE+G+AQAN A AEGKTDEAV
Sbjct: 1   MRASKLNVGLIVSAMLVLALGGCTNIQPKSNPGDDAKNALESGLAQANAAHAEGKTDEAV 60

Query: 61  SVLKVVASRFPADKTPWLRIAQIRFDAGDYSDAIVNAQEALKRDPSDKVANSIVTVSGLR 120
           SVLK VASRFPADK PW+RIAQ+RFDAGDYSDAIVNAQEAL+RDP DKVAN +VT+SGLR
Sbjct: 61  SVLKAVASRFPADKNPWIRIAQLRFDAGDYSDAIVNAQEALRRDPGDKVANGVVTLSGLR 120

Query: 121 LATKSLGDLRAQNALNGSVKTEAQDLTKILRESLGENTLVPAPAKPAATTRARGKVARKA 180
           LA KS GDLRAQNALNG++K EAQDLTKILRE+LGEN LVP P K     RARGK ARK 
Sbjct: 121 LAVKSSGDLRAQNALNGTLKAEAQDLTKILRENLGENNLVPQP-KAVTPPRARGKAARKT 179

Query: 181 APAAADTTDSGNSGGGSGPNPFGNLK 206
              +A  T+SGN   GSGPNPFGNLK
Sbjct: 180 --TSASDTESGN---GSGPNPFGNLK 200


>gi|300310075|ref|YP_003774167.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 209

 Score =  284 bits (726), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/211 (74%), Positives = 174/211 (82%), Gaps = 7/211 (3%)

Query: 1   MRASKFKVGLIVPALLVLMLAGCANTQSKPSPEEEAKNTLENGVAQANTAQAEGKTDEAV 60
           MR +  K GL++PALL+ +L+GCANT SKP PE+EAKNTLE+GVA+AN AQ EGKTDEAV
Sbjct: 1   MRINTIKTGLVIPALLLAVLSGCANTSSKPGPEDEAKNTLESGVAKANAAQTEGKTDEAV 60

Query: 61  SVLKVVASRFPADKTPWLRIAQIRFDAGDYSDAIVNAQEALKRDPSDKVANSIVTVSGLR 120
           SVLKVVA+RFPADKTPW+RIAQIRFD+GDYSDAIVNAQEALKRDP+DKVANSIVTV+ LR
Sbjct: 61  SVLKVVAARFPADKTPWVRIAQIRFDSGDYSDAIVNAQEALKRDPTDKVANSIVTVASLR 120

Query: 121 LATKSLGDLRAQNALNGSVKTEAQDLTKILRESLGENTLVPAPAKPAATTRARGKVARKA 180
           LATK+LGDLR QNALNGSVKTEAQDLTKILRESLGE  L   P         RG+V RKA
Sbjct: 121 LATKALGDLRTQNALNGSVKTEAQDLTKILRESLGEAAL--VPPPAKPPVAKRGRVQRKA 178

Query: 181 A--PAAADTTD---SGNSGGGSGPNPFGNLK 206
           A  PAA D  D   S  S GGSGPNPFGNLK
Sbjct: 179 APQPAAPDNDDAGGSAPSSGGSGPNPFGNLK 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.125    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 419,092
Number of extensions: 14543
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 128 (53.9 bits)