BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3922.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313321|ref|YP_003777413.1| hypothetical protein Hsero_4034...   282   1e-77
gi|300310079|ref|YP_003774171.1| hypothetical protein Hsero_0744...   269   1e-73

>gi|300313321|ref|YP_003777413.1| hypothetical protein Hsero_4034
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  282 bits (721), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 150/162 (92%)

Query: 1   MKGFAPSLFDKLMNEGAKSSFSPIVSRLSIEELKDAVARDLEAMLNTRSVISDELLQQYP 60
           MKGFAPSLFDKLM+EG ++S   +++RLSIEELKD VARDLEAMLNTRSVI++  L+Q+P
Sbjct: 1   MKGFAPSLFDKLMSEGPRASVGAVINRLSIEELKDVVARDLEAMLNTRSVIAEASLEQFP 60

Query: 61  ECSGSIIAYGLNDFAGMSLASLDDRMAICSALEQAITRHEPRLRNVKATLEIQEGSINRL 120
           ECS SII YGLNDFAGMSLASLDDR AIC +LE+AITRHEPRLR VKATLEIQ+GSINRL
Sbjct: 61  ECSNSIITYGLNDFAGMSLASLDDRSAICHSLEEAITRHEPRLRGVKATLEIQDGSINRL 120

Query: 121 NFAITALLVVNAARETVNFDAVLQPSTLQYSISKSRTTRIGV 162
           NFAI+ALLVVNAARETVNFDAVLQPSTLQYSISKSRTTRIGV
Sbjct: 121 NFAISALLVVNAARETVNFDAVLQPSTLQYSISKSRTTRIGV 162


>gi|300310079|ref|YP_003774171.1| hypothetical protein Hsero_0744
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  269 bits (687), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 129/162 (79%), Positives = 147/162 (90%)

Query: 1   MKGFAPSLFDKLMNEGAKSSFSPIVSRLSIEELKDAVARDLEAMLNTRSVISDELLQQYP 60
           MKGFAPSLFD+LM+E  + S + +VSRLSIEELKDAVARDLEAMLNTR+VI ++L + +P
Sbjct: 1   MKGFAPSLFDRLMHESDRVSPNTVVSRLSIEELKDAVARDLEAMLNTRAVIPEQLFRHFP 60

Query: 61  ECSGSIIAYGLNDFAGMSLASLDDRMAICSALEQAITRHEPRLRNVKATLEIQEGSINRL 120
           ECS SIIAYGLNDFAGMSLASLDDR AIC +LE+AI RHEPRLRNV+A+LE+QEGSINRL
Sbjct: 61  ECSKSIIAYGLNDFAGMSLASLDDRAAICRSLEEAIARHEPRLRNVRASLEVQEGSINRL 120

Query: 121 NFAITALLVVNAARETVNFDAVLQPSTLQYSISKSRTTRIGV 162
           NFAI+ALLVVNAARE V+FDAVLQPS+LQYSISK R TRIGV
Sbjct: 121 NFAISALLVVNAAREAVSFDAVLQPSSLQYSISKGRATRIGV 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 403,780
Number of extensions: 12784
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 2
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)