BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3921.p (614 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033... 1105 0.0 gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745... 1078 0.0 >gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033 [Herbaspirillum seropedicae SmR1] Length = 614 Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/614 (87%), Positives = 569/614 (92%) Query: 1 VQELLPYYERELSFLRRYSREFSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVS 60 +QELLPYYERELSFLRRYSR+FSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVS Sbjct: 1 MQELLPYYERELSFLRRYSRDFSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVS 60 Query: 61 KRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARMDSAASAAQLTGATRISRGTALSTRPV 120 KRLDDDYP+FTEALFEVLYPHYLRPFPSCSIARMD A SA QLT AT I RGT LSTRPV Sbjct: 61 KRLDDDYPQFTEALFEVLYPHYLRPFPSCSIARMDCAESAEQLTSATIIPRGTTLSTRPV 120 Query: 121 KGVVCRFQTVYDVPVAPIRLSQAIFAPIIEAPEAVVLAPTITSSLSITIETTSDQINLAK 180 KGVVC+FQTVYDVPVAPI L+ A+F+PII+APEAVVL ++TSSLSI I T +Q+ LAK Sbjct: 121 KGVVCQFQTVYDVPVAPICLTHAVFSPIIDAPEAVVLPTSVTSSLSIGIATAGEQLALAK 180 Query: 181 LGLASLRVFIDGEASFCAALRDTLFMRSVSAWAELPHSGRWVALRKLPLAEVGFAEEDAL 240 L L SLRVFIDGEASFCAALRD+LFMRS +AW ELP S RWV L +PLAEVGFA+EDAL Sbjct: 181 LDLVSLRVFIDGEASFCAALRDSLFMRSAAAWIELPGSRRWVPLPAIPLAEVGFADEDAL 240 Query: 241 IDFPAQSHPAYRLLTEYFAFPEKFNFFDIDLASILSALPVGTKSFTLHLGLAGLRADSHI 300 IDFP+QSHPAYR LTEYFAFPEKFNFFDIDL++IL+ LP +KSF LHLGL+GLRADSHI Sbjct: 241 IDFPSQSHPAYRHLTEYFAFPEKFNFFDIDLSAILAVLPADSKSFILHLGLSGLRADSHI 300 Query: 301 ARQLGGLGAANLLLGCTPVINLFQQRGDPIRLTHAGAYYPVLPDARRAYGYEVYSIDSVQ 360 ARQLGG+ AANLLLGCTPVINLF QRGDPIRLTHAGAYYPVLPD RRA+GYEVYSIDSVQ Sbjct: 301 ARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTHAGAYYPVLPDGRRAFGYEVYSIDSVQ 360 Query: 361 LVRQTPSGESITRFRPFYSLHHGQSPEQDGHYWAMRRDELVALKSPGYETEICIVDIDFD 420 LVR+TP GESIT FRPFYSL HGQSPE DGHYWAMRRDEL+ALKSPGYETEI IVDIDFD Sbjct: 361 LVRETPQGESITSFRPFYSLRHGQSPESDGHYWAMRRDELIALKSPGYETEISIVDIDFD 420 Query: 421 PAKVETDTLSIELTCTNRDLPALLTYGLPGGDLSMEGGGVVRTAALLRKPTLPSRFERGR 480 P+K+ETDTLSIELTCTNRDLPALL YGLPGGDLS+EGGGV+RTAALLRKPTLPSRFERGR Sbjct: 421 PSKIETDTLSIELTCTNRDLPALLAYGLPGGDLSLEGGGVIRTAALLRKPTLPSRFERGR 480 Query: 481 GTQWRLISHLSLNHLSLMRGGLEAFQEMLTLYDQSNSPISQRQISAIAAVDHKATTAWLP 540 G QWRLIS LSLNHLSLMR GLEAFQEMLTLYDQSNSPISQRQISAIAA+DH+ TAWLP Sbjct: 481 GAQWRLISQLSLNHLSLMRVGLEAFQEMLTLYDQSNSPISQRQISAIAAIDHRPATAWLP 540 Query: 541 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFISLYVHANSFSQLSVISKRTGEE 600 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRF+ LYVHANSFSQL+VISKRTGEE Sbjct: 541 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFMGLYVHANSFSQLTVISKRTGEE 600 Query: 601 LLKCRPRSGDLSLA 614 LLKCRPRSGDLSLA Sbjct: 601 LLKCRPRSGDLSLA 614 >gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745 [Herbaspirillum seropedicae SmR1] Length = 614 Score = 1078 bits (2788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 531/614 (86%), Positives = 577/614 (93%) Query: 1 VQELLPYYERELSFLRRYSREFSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVS 60 +QELLPYYERELSFLRRYSREFSERYPKIAGSLLM+GE+CEDPHIERMIQSYALLNARVS Sbjct: 1 MQELLPYYERELSFLRRYSREFSERYPKIAGSLLMSGEVCEDPHIERMIQSYALLNARVS 60 Query: 61 KRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARMDSAASAAQLTGATRISRGTALSTRPV 120 KRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARMD AASAAQLT A+ I RGTAL+TR V Sbjct: 61 KRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARMDYAASAAQLTTASVIPRGTALTTRQV 120 Query: 121 KGVVCRFQTVYDVPVAPIRLSQAIFAPIIEAPEAVVLAPTITSSLSITIETTSDQINLAK 180 KGV C+FQT YDV VAPIRLS A FAPIIEAPEAV L +++SSLSI I+TTS+Q+ LA+ Sbjct: 121 KGVACKFQTAYDVTVAPIRLSHATFAPIIEAPEAVTLPTSVSSSLSIVIDTTSEQLTLAQ 180 Query: 181 LGLASLRVFIDGEASFCAALRDTLFMRSVSAWAELPHSGRWVALRKLPLAEVGFAEEDAL 240 LGL+SLRVFIDGEASFCAALRD+LFMRSV+AW ELP+SGRW ALRK+PLAEVGFAE+DAL Sbjct: 181 LGLSSLRVFIDGEASFCAALRDSLFMRSVAAWVELPNSGRWTALRKVPLAEVGFAEDDAL 240 Query: 241 IDFPAQSHPAYRLLTEYFAFPEKFNFFDIDLASILSALPVGTKSFTLHLGLAGLRADSHI 300 IDFPA+SHPAYRLLTEYF FPEKFNFFD+DLA+IL+ LP GT+ FTLHLGL+GLRADSH+ Sbjct: 241 IDFPARSHPAYRLLTEYFCFPEKFNFFDLDLAAILALLPTGTRKFTLHLGLSGLRADSHV 300 Query: 301 ARQLGGLGAANLLLGCTPVINLFQQRGDPIRLTHAGAYYPVLPDARRAYGYEVYSIDSVQ 360 ARQLGG+ AANLLLGCTPVINLF+QRGDPIRLTHAGA YPV+PDARRA+GYEVYSIDSVQ Sbjct: 301 ARQLGGVSAANLLLGCTPVINLFRQRGDPIRLTHAGASYPVVPDARRAFGYEVYSIDSVQ 360 Query: 361 LVRQTPSGESITRFRPFYSLHHGQSPEQDGHYWAMRRDELVALKSPGYETEICIVDIDFD 420 LVRQTP GES+T+FRPFYSL HGQSPE++GHYWAMRRDELVALKSPGYETEI IVDIDFD Sbjct: 361 LVRQTPQGESVTQFRPFYSLRHGQSPEKEGHYWAMRRDELVALKSPGYETEISIVDIDFD 420 Query: 421 PAKVETDTLSIELTCTNRDLPALLTYGLPGGDLSMEGGGVVRTAALLRKPTLPSRFERGR 480 PA+VETDTLSIELTCTNRDLPA LTYGLPGGDL MEGGG+VR+AALLRKPTLP+RFERGR Sbjct: 421 PAEVETDTLSIELTCTNRDLPASLTYGLPGGDLQMEGGGLVRSAALLRKPTLPARFERGR 480 Query: 481 GTQWRLISHLSLNHLSLMRGGLEAFQEMLTLYDQSNSPISQRQISAIAAVDHKATTAWLP 540 G WRLISHLSLNHLSLMRGGLEAFQEMLTLYD SNSPISQRQI AI ++DHKA+TAWLP Sbjct: 481 GAHWRLISHLSLNHLSLMRGGLEAFQEMLTLYDLSNSPISQRQIGAIVSIDHKASTAWLP 540 Query: 541 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFISLYVHANSFSQLSVISKRTGEE 600 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRF+ LYVHANSF+QL V+SKRT EE Sbjct: 541 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFLGLYVHANSFTQLRVLSKRTAEE 600 Query: 601 LLKCRPRSGDLSLA 614 LL C+PRSGDL+LA Sbjct: 601 LLICKPRSGDLNLA 614 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,793,282 Number of extensions: 71987 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 2 Length of query: 614 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 523 Effective length of database: 1,188,985 Effective search space: 621839155 Effective search space used: 621839155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)