BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3920.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746...   603   e-174
gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032...   580   e-167

>gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746
           [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  603 bits (1554), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 293/362 (80%), Positives = 320/362 (88%), Gaps = 2/362 (0%)

Query: 1   MQATQRRFEPSVIERIFAAPHRFQFFQAVRMIELWFKRNGVPHERAVCDFLRFANRTVLG 60
           MQATQRRFEPSVIER+FAAPHRFQFFQAVRMIELWFKRNGV  ERAVCDFLRFANRT LG
Sbjct: 1   MQATQRRFEPSVIERLFAAPHRFQFFQAVRMIELWFKRNGVAPERAVCDFLRFANRTALG 60

Query: 61  FPASEIERIETYPPRSEEALSVSDMEQALRSGQMKYVRLTPTFMGFLGGSGTLPAHYTER 120
           FPASEIE I+     S +  SV+ M Q+LR G+MKYVRLTPTFMGFLGGSG LPAHYTER
Sbjct: 61  FPASEIEAIDAVA--SSDDTSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTER 118

Query: 121 IARHQIEQRDDGPRAFLDAFSTRSLALFYQAWSKYRLAFQYEAGRRDKFLPLLLSLSGLG 180
           IARHQIE RD+GPRAFLD FSTRSLALFYQAWSKYRLAFQYE GRRDKFLPLLLSLSG+G
Sbjct: 119 IARHQIEHRDEGPRAFLDVFSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIG 178

Query: 181 FRSLRERLRTVDGSGVRDESLAHFAGAFRHRPASAPYMQKVLGEYFSVPLQIEQFVGHWY 240
           FRSLRERL  VDG GVRDES+AHFA A  HRPASAPYMQ+VL EYFS+PL IEQFVG WY
Sbjct: 179 FRSLRERLLEVDGRGVRDESIAHFAAALSHRPASAPYMQQVLSEYFSIPLTIEQFVGQWY 238

Query: 241 DVPREHQTMLGSTNSALGTAMAGERVWQRDLRMRLRIGPLAMHDFEQFLPGARASLALAR 300
           DVPREHQTMLGSTNSALGTAMAG+RVWQRDLRMRLR+GPLA+ DFEQFLPGARAS AL+R
Sbjct: 239 DVPREHQTMLGSTNSALGTAMAGQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQALSR 298

Query: 301 MLGMFTGSSLEYEVQLVLRAPDVHGMALDAKRQGGRLGWDTFISTEPETRDRADIRYEIA 360
           MLG+FTG +LEYE+QL+LRA DV G+ L   R GGRLGWD+F++T P+ +DRADI Y++A
Sbjct: 299 MLGVFTGPTLEYEIQLILRAEDVRGLGLSPDRTGGRLGWDSFVATAPQQQDRADICYQLA 358

Query: 361 VQ 362
           V 
Sbjct: 359 VH 360


>gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  580 bits (1495), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/362 (79%), Positives = 322/362 (88%)

Query: 1   MQATQRRFEPSVIERIFAAPHRFQFFQAVRMIELWFKRNGVPHERAVCDFLRFANRTVLG 60
           MQATQRRFEPSVIER+FA PHRFQFFQAVRMIE WF+RNGVPHERAV DF+RFANRTVLG
Sbjct: 1   MQATQRRFEPSVIERLFAVPHRFQFFQAVRMIECWFRRNGVPHERAVSDFVRFANRTVLG 60

Query: 61  FPASEIERIETYPPRSEEALSVSDMEQALRSGQMKYVRLTPTFMGFLGGSGTLPAHYTER 120
           FPASEIE I+TYP R  EA+SV +MEQALR GQMKYVR+TPTFMGFLG SG+LPAHYTER
Sbjct: 61  FPASEIEAIDTYPSREGEAISVDNMEQALRCGQMKYVRITPTFMGFLGSSGSLPAHYTER 120

Query: 121 IARHQIEQRDDGPRAFLDAFSTRSLALFYQAWSKYRLAFQYEAGRRDKFLPLLLSLSGLG 180
           +ARHQIE RD+GPRAFLDAFSTRSLALFY AW+KYRL F Y+ GRRD FLPLLLSLSGLG
Sbjct: 121 VARHQIEHRDEGPRAFLDAFSTRSLALFYHAWNKYRLTFHYDVGRRDTFLPLLLSLSGLG 180

Query: 181 FRSLRERLRTVDGSGVRDESLAHFAGAFRHRPASAPYMQKVLGEYFSVPLQIEQFVGHWY 240
           F SLR+RL+   G+GVRDESL +FAGA RHRP SA YMQKVLGEYFSVPLQIEQF+G+WY
Sbjct: 181 FHSLRQRLQDGTGNGVRDESLGYFAGALRHRPPSALYMQKVLGEYFSVPLQIEQFIGYWY 240

Query: 241 DVPREHQTMLGSTNSALGTAMAGERVWQRDLRMRLRIGPLAMHDFEQFLPGARASLALAR 300
            VPR+HQT+LGSTNS LG AM GERVWQRDLRMRLRIGP+A+ DFE+FLPG   S+ALAR
Sbjct: 241 KVPRQHQTVLGSTNSVLGKAMVGERVWQRDLRMRLRIGPVAIRDFEKFLPGKEVSVALAR 300

Query: 301 MLGMFTGSSLEYEVQLVLRAPDVHGMALDAKRQGGRLGWDTFISTEPETRDRADIRYEIA 360
           MLGMF+GS+LEYEV++ L A DV GM L + R+GGRLGWD+F++T PETRDRAD+RYEI+
Sbjct: 301 MLGMFSGSTLEYEVEVALLAQDVRGMTLGSMREGGRLGWDSFVATAPETRDRADLRYEIS 360

Query: 361 VQ 362
           VQ
Sbjct: 361 VQ 362


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,099,512
Number of extensions: 44473
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)