BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3919.p (891 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [... 1553 0.0 gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [H... 1502 0.0 gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subu... 532 e-152 gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-bind... 271 1e-73 >gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [Herbaspirillum seropedicae SmR1] Length = 893 Score = 1553 bits (4022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 791/898 (88%), Positives = 833/898 (92%), Gaps = 12/898 (1%) Query: 1 MGINLKSLISKLNDTARIATERAATLCMSRGQYEVDLEHLFLALLDQPQSDFSLIARRSG 60 MGINLKSLISKLND++R+ATERAA+LCM+RGQYEVDLEHLFLALL+ PQ+DFSLI RRSG Sbjct: 1 MGINLKSLISKLNDSSRLATERAASLCMARGQYEVDLEHLFLALLENPQTDFSLIVRRSG 60 Query: 61 ISIDSLQADLEREIATFKNGNTRTPVLSPHLQTLFEHAWLIASLDGGNPAIRSSHLLLAL 120 IS DSLQADLE EI+ FKNGNTRTPVLS HLQTLFEH WLIASLDG P+IRS HLLLAL Sbjct: 61 ISPDSLQADLEHEISQFKNGNTRTPVLSSHLQTLFEHGWLIASLDGERPSIRSGHLLLAL 120 Query: 121 LTQSELSQLAYRGSKLFAKFKVAELKHDLYKLTEGSVEALAESV-------SGQGPAGDM 173 LTQ+EL+QLAYRGSKLFA+FKV ELKHDL KLTEGSVEA A + GQ D Sbjct: 121 LTQTELAQLAYRGSKLFARFKVDELKHDLAKLTEGSVEAPALASASASAAADGQA---DE 177 Query: 174 NESADPVGEMNARPSGKTPALDQYTTQLTQRARDGKIDPVIGRDGEIRQAVDILLRRRQN 233 + DPVGEM R G+TPALDQYTT LTQRAR+GKIDPV+GRDGEIRQAVDILLRRRQN Sbjct: 178 QQGGDPVGEM--RAGGRTPALDQYTTNLTQRAREGKIDPVVGRDGEIRQAVDILLRRRQN 235 Query: 234 NPILTGEAGVGKTAVVEGLALRIAAGDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLK 293 NPILTGEAGVGKTAVVEGLALRIA DVPQALQGVEIHTLDMGLLQAGASVKGEFENRLK Sbjct: 236 NPILTGEAGVGKTAVVEGLALRIAQDDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLK 295 Query: 294 NVIDEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYK 353 VIDEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYK Sbjct: 296 GVIDEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYK 355 Query: 354 KYFEKDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAISEAVRLSHRY 413 KYFEKDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAI+EAVRLSHRY Sbjct: 356 KYFEKDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRY 415 Query: 414 ISGRQLPDKAISVLDTACAKVALGQNATPALLEGVSRRLERIAAEMAALEREAASGSLHE 473 ISGRQLPDKAISVLDTACAKVALGQNATPA LEGV+RRLER+AAE+AALERE SG+ H Sbjct: 416 ISGRQLPDKAISVLDTACAKVALGQNATPARLEGVTRRLERLAAEIAALERETRSGASHA 475 Query: 474 ARLTELRSQHEAALAEQTDLKARWVQERGLNERIQQARAALEDANRNGQTGQDADAARAE 533 RL EL++QH A+AEQT+L+ RW QER LN RIQ ARAALE+AN+ + QD+ AAR+E Sbjct: 476 TRLGELQAQHAQAIAEQTELQQRWEQERELNGRIQAARAALEEANQESASSQDSAAARSE 535 Query: 534 LKQLLDELKQHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLRER 593 L+QLL +LK+HQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALL+ER Sbjct: 536 LQQLLAQLKEHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLKER 595 Query: 594 VLGQPQATSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKL 653 VLGQPQAT+AVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKL Sbjct: 596 VLGQPQATAAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKL 655 Query: 654 ITINMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEL 713 ITINMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEL Sbjct: 656 ITINMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEL 715 Query: 714 FFQVFDKGVMDDGEGREIDFKNTIIILTSNVASAQMMQACLNKTAQELPTPDELDALIRP 773 FFQVFDKGVMDDGEGREIDFKNTIIILTSNVAS+Q+MQACLNK+A ELPTPDELD LIRP Sbjct: 716 FFQVFDKGVMDDGEGREIDFKNTIIILTSNVASSQLMQACLNKSAAELPTPDELDVLIRP 775 Query: 774 QLVKAFKPAFLGRLKVIPYYPIADEVLVEIIKLKLGRIAKRIAENHKAEFSYDKALVEAV 833 QLVKAFKPAFLGRLKVIPYYPI+DEVL +IIKLKLGRIA RIAENHKAEFSYDKALVEAV Sbjct: 776 QLVKAFKPAFLGRLKVIPYYPISDEVLEQIIKLKLGRIANRIAENHKAEFSYDKALVEAV 835 Query: 834 LARCTEVDSGARNVDNILNGSLLPEIAESVLARMAEGQSISRIKVSASKKGDFKYTIQ 891 LARCTEVDSGARNVDNILNGSLLPEIAESVLARMAEGQ ISRIKVSA KKGDFKYTIQ Sbjct: 836 LARCTEVDSGARNVDNILNGSLLPEIAESVLARMAEGQGISRIKVSAGKKGDFKYTIQ 893 >gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [Herbaspirillum seropedicae SmR1] Length = 889 Score = 1502 bits (3889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 751/891 (84%), Positives = 807/891 (90%), Gaps = 2/891 (0%) Query: 1 MGINLKSLISKLNDTARIATERAATLCMSRGQYEVDLEHLFLALLDQPQSDFSLIARRSG 60 MGINL+SLI KLN+TAR+ATERAATLC+S YEVDLEHLFLALL+QPQSDFSLIARRSG Sbjct: 1 MGINLRSLICKLNETARLATERAATLCVSCSHYEVDLEHLFLALLEQPQSDFSLIARRSG 60 Query: 61 ISIDSLQADLEREIATFKNGNTRTPVLSPHLQTLFEHAWLIASLDGGNPAIRSSHLLLAL 120 I D LQADLE EI+TF+ GN RTPVLSPHL+TLFE+ WLIASL+ NP++RS+HLLLAL Sbjct: 61 IDTDGLQADLEHEISTFREGNARTPVLSPHLRTLFENGWLIASLEESNPSVRSAHLLLAL 120 Query: 121 LTQSELSQLAYRGSKLFAKFKVAELKHDLYKLTEGSVEALAESVSGQGPAGDMNESADPV 180 LTQS+LSQLAYRGSKLFAKFK+ E+KH+L++LTEGSVE+ A +GQG GD DP+ Sbjct: 121 LTQSDLSQLAYRGSKLFAKFKIDEIKHNLHRLTEGSVESAAIGKTGQG--GDRESGGDPM 178 Query: 181 GEMNARPSGKTPALDQYTTQLTQRARDGKIDPVIGRDGEIRQAVDILLRRRQNNPILTGE 240 GE+ GK ALDQYTTQLTQRARDGKIDPVIGRD EIRQAVDILLRRRQNNPILTGE Sbjct: 179 GELKQLRIGKMTALDQYTTQLTQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNPILTGE 238 Query: 241 AGVGKTAVVEGLALRIAAGDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKNVIDEVK 300 AGVGKTAVVEGLALRIA GDVP+ LQGVEIHTLDMGLLQAGASVKGEFE+RLK VIDEVK Sbjct: 239 AGVGKTAVVEGLALRIAQGDVPKPLQGVEIHTLDMGLLQAGASVKGEFESRLKTVIDEVK 298 Query: 301 KSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDA 360 KS +PIILFIDEAHTMIGA GQAGQ+DAANLLKPALARGELRTIAATTWSEYKKYFEKDA Sbjct: 299 KSAYPIILFIDEAHTMIGAAGQAGQSDAANLLKPALARGELRTIAATTWSEYKKYFEKDA 358 Query: 361 ALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAISEAVRLSHRYISGRQLP 420 ALARRFQVIKVEEP E+VACAMLRAM PLME+HFGVRVYDEA+ EAVRLSHRYISGRQLP Sbjct: 359 ALARRFQVIKVEEPGEDVACAMLRAMVPLMEQHFGVRVYDEAVVEAVRLSHRYISGRQLP 418 Query: 421 DKAISVLDTACAKVALGQNATPALLEGVSRRLERIAAEMAALEREAASGSLHEARLTELR 480 DKAISVLDTACAKVALG++ATPALLEGV+RRLER+ E++AL REAASGS HE RL L Sbjct: 419 DKAISVLDTACAKVALGRDATPALLEGVTRRLERLDTEISALRREAASGSQHEERLASLL 478 Query: 481 SQHEAALAEQTDLKARWVQERGLNERIQQARAALEDANRNGQTGQDADAARAELKQLLDE 540 QH A+AE+ DL+ RW QER LNERIQQARA LE+ G + DAARAELKQLLDE Sbjct: 479 DQHVCAVAERHDLQLRWEQERELNERIQQARATLENPGTGDARGGNVDAARAELKQLLDE 538 Query: 541 LKQHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLGQPQA 600 L+Q QG+ PMVP+QVDGHVVAEIVA WTGIPLGKMVKDEI+TVL LDALL+ERVLGQPQA Sbjct: 539 LRQRQGDAPMVPIQVDGHVVAEIVAAWTGIPLGKMVKDEIQTVLDLDALLQERVLGQPQA 598 Query: 601 TSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSE 660 TSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSE Sbjct: 599 TSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSE 658 Query: 661 YQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDK 720 YQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAH DVLELFFQVFDK Sbjct: 659 YQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHADVLELFFQVFDK 718 Query: 721 GVMDDGEGREIDFKNTIIILTSNVASAQMMQACLNKTAQELPTPDELDALIRPQLVKAFK 780 GVMDD EGREIDFKNTIIILTSNVASAQMMQACLNK+ +ELPTP+ELD LIRPQL+K FK Sbjct: 719 GVMDDAEGREIDFKNTIIILTSNVASAQMMQACLNKSQEELPTPEELDTLIRPQLIKTFK 778 Query: 781 PAFLGRLKVIPYYPIADEVLVEIIKLKLGRIAKRIAENHKAEFSYDKALVEAVLARCTEV 840 PAFLGRLKV+PYYPIAD VLVEIIKLKL RIAKR+AENH+ EFSYDKALVEAVL RCTEV Sbjct: 779 PAFLGRLKVVPYYPIADVVLVEIIKLKLARIAKRVAENHRVEFSYDKALVEAVLGRCTEV 838 Query: 841 DSGARNVDNILNGSLLPEIAESVLARMAEGQSISRIKVSASKKGDFKYTIQ 891 DSGARNVDNIL+G+LLP +AESVL RMAEG I RIKVSASKKGDFKYTIQ Sbjct: 839 DSGARNVDNILSGTLLPAVAESVLVRMAEGVEIRRIKVSASKKGDFKYTIQ 889 >gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subunit [Herbaspirillum seropedicae SmR1] Length = 861 Score = 532 bits (1370), Expect = e-152, Method: Compositional matrix adjust. Identities = 333/863 (38%), Positives = 483/863 (55%), Gaps = 66/863 (7%) Query: 39 HLFLALLDQPQSDFSLIARRSGISIDSLQADLEREIATFK--NGNTRTPVLSPHLQTLFE 96 HL LALL+Q + +R+G++++ L A L+ + +GN + L L Sbjct: 33 HLILALLNQEDGGARSLLQRAGVNVNGLSAALQAAVKRLPQVSGNGGEVQVGRELVALLN 92 Query: 97 HAWLIASLDGGNPAIRSSHLLLALLTQSELSQLAYRGSKLFAKFKVAELKHDLYKLTEGS 156 A A G+ + S +LL L+ + A R + L T S Sbjct: 93 LADKEAQ-KHGDQFVASEMVLLGLVDDKSDAGRAARENGL----------------TRKS 135 Query: 157 VEALAESVSGQGPAGDMNESADPVGEMNARPSGKTPALDQYTTQLTQRARDGKIDPVIGR 216 +EA +V G + G+ AL +YT LT+RAR GK+DPVIGR Sbjct: 136 LEAAITAVRGGASVSSQQDE------------GQREALKKYTLDLTERARAGKLDPVIGR 183 Query: 217 DGEIRQAVDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPQALQGVEIHTLDMG 276 D EIR+A+ +L RR +NNP+L GE GVGKTA+VEGLA RI G+VP +L+ + +LDM Sbjct: 184 DDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKSKRVLSLDMA 243 Query: 277 LLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPAL 336 L AGA +GEFE RLK V+ E+ + I+FIDE HTM+GAG G DA N+LKPAL Sbjct: 244 ALLAGAKYRGEFEERLKAVLKEIAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLKPAL 303 Query: 337 ARGELRTIAATTWSEYKKYFEKDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGV 396 ARGEL + ATT EY++Y EKDAAL RRFQ I V+EP+ E A+LR + E H GV Sbjct: 304 ARGELHCVGATTLDEYRQYIEKDAALERRFQKILVDEPSVEATIAILRGLQEKYEVHHGV 363 Query: 397 RVYDEAISEAVRLSHRYISGRQLPDKAISVLDTACAKVALGQNATPALLEGVSRRLERIA 456 + D AI A LSHRYI+ R LPDKAI ++D A +K+ + ++ P +++ + RRL ++ Sbjct: 364 DITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIEIDSKPEVMDKLDRRLIQLK 423 Query: 457 AEMAALEREAASGSLHEARLTELRSQHEAALAEQTDLKARWVQERG-------LNERIQQ 509 E A++RE S + RL + + E E DL+ W E+ L E I++ Sbjct: 424 IEREAVKREKDEAS--QKRLQLIEEEIEKLEREYADLEEIWKAEKSSAQGGQQLKEEIEK 481 Query: 510 ARAALEDANRNGQTGQDADAARAELKQLLDELKQH--------QGETP-MVPVQVDGHVV 560 R +E+A R + ++ +L +L L+ + E P +V QV + Sbjct: 482 VRLQMEEATRKSDWQKVSELKYGKLAELEAALEVQNKKDAAGVKTEKPKLVRTQVGAEEI 541 Query: 561 AEIVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLGQPQATSAVAQRVRTSRANLDDPGK 620 AEIVA TGIP+ +M++ E + +L ++ +L ERV+GQ +A AV+ +R SRA L DP K Sbjct: 542 AEIVARATGIPVSRMMQGEREKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSK 601 Query: 621 PKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVGY 680 P G F+F+GP+GVGKTE ALA L+ E +I I+MSE+ E H+V+ L G+PPGYVGY Sbjct: 602 PYGSFMFLGPTGVGKTELCKALASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGY 661 Query: 681 GEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNTIIIL 740 EGG LTEAVRR PYSV+LLDE+EKAHPDV + QV D G M DG+GR +DFKNT+I++ Sbjct: 662 EEGGYLTEAVRRKPYSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVM 721 Query: 741 TSNVASAQMMQACLNKTAQELPTPDELDALIRPQLVKAFKPAFLGRL-KVIPYYPIADEV 799 TSN+ S ++ + E P + + ++ F+P F+ R+ +++ ++ + + Sbjct: 722 TSNLGSHKIQ-------SMEDSDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKN 774 Query: 800 LVEIIKLKLGRIAKRIAENHKAEFSYDKALVEAVLARCTEVD----SGARNVDNILNGSL 855 + I K++L RI E A+ + EA L + E GAR + + + Sbjct: 775 IGAIAKIQL-----RILEQRLAKLEIGLEISEAGLQKIAEAGFDPVYGARPLKRAIQQEI 829 Query: 856 LPEIAESVLARMAEGQSISRIKV 878 +++ +LA + + R+ V Sbjct: 830 ENPLSKQILAGKFGPKDVVRVDV 852 >gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-binding specificity subunit [Herbaspirillum seropedicae SmR1] Length = 767 Score = 271 bits (694), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 167/435 (38%), Positives = 242/435 (55%), Gaps = 46/435 (10%) Query: 18 IATERAATLCM-------SRGQYEVDLEHLFLALLDQPQSDFSLIARRSGISIDSLQADL 70 IA E +L M SR ++ + +EHL LALLD P + + + R ++ID DL Sbjct: 2 IAQELEVSLHMAFVEARQSRHEF-ITVEHLLLALLDNPSA--AEVLRACSVNID----DL 54 Query: 71 EREIATFKNGNTRT----------PVLSPHLQTLFEHAWL-IASLDGGNPAIRSSHLLLA 119 + + F NT T P L Q + + A + + S G + +++L+A Sbjct: 55 RKTLTNFITDNTPTVPGTNEVDTQPTLG--FQRVIQRAIMHVQSASNGKKEVTGANVLVA 112 Query: 120 LLTQSELSQLAYRGSKLFAKFKVAE-LKHDLYKLTEGSVEALAESVSGQGPAGDMNESAD 178 + + + + Y + + V + H + K + + E G ES Sbjct: 113 IFGEKDSHAVYYLHQQGVTRLDVVNFISHGVRKDQQADPQKAPEGAEDVQAEGQQKESP- 171 Query: 179 PVGEMNARPSGKTPALDQYTTQLTQRARDGKIDPVIGRDGEIRQAVDILLRRRQNNPILT 238 LDQ+T L + A +GKIDP+IGR+ E+ + + L RRR+NNP+L Sbjct: 172 ---------------LDQFTQNLNKAAAEGKIDPLIGRESEVERVIQTLCRRRKNNPLLV 216 Query: 239 GEAGVGKTAVVEGLALRIAAGDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKNVIDE 298 GEAGVGKTA+ EGLA R+ GDVP+ L+ +++LDMG L AG +G+FE RLK V+ + Sbjct: 217 GEAGVGKTAIAEGLAWRVTQGDVPEILKNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQ 276 Query: 299 VKKSPHPIILFIDEAHTMIGAGGQAGQN-DAANLLKPALARGELRTIAATTWSEYKKYFE 357 +K SP+ ILFIDE HT+IGAG +G DA+NLLKPAL+ G+L+ I ATT++E++ FE Sbjct: 277 LKDSPNG-ILFIDEIHTIIGAGSASGGTLDASNLLKPALSSGQLKCIGATTYTEFRGVFE 335 Query: 358 KDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAISEAVRLSHRYISGR 417 KD AL+RRFQ I V EPT E +LR + E+H GV+ A++ A L+ R+I+ R Sbjct: 336 KDHALSRRFQKIDVNEPTVEQTVQILRGLKSKFEEHHGVKYSASALTSAAELAARFINDR 395 Query: 418 QLPDKAISVLDTACA 432 LPDKAI V+D A A Sbjct: 396 HLPDKAIDVIDEAGA 410 Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 177/306 (57%), Gaps = 11/306 (3%) Query: 560 VAEIVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLGQPQATSAVAQRVRTSRANLDDPG 619 + EI++ IP + +D+ + +D L+ V GQ A A++ ++ +RA L Sbjct: 429 IEEIISKIARIPPQSVNQDDRAKLQTIDRDLKNVVFGQDPAIEALSSAIKMARAGLGKTD 488 Query: 620 KPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVG 679 KP G FLF GP+GVGKTE A LA +L G E L+ +MSEY E H VS L G+PPGYVG Sbjct: 489 KPIGSFLFSGPTGVGKTEVAKQLAFIL-GIE--LVRFDMSEYMERHAVSRLIGAPPGYVG 545 Query: 680 YGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNTIII 739 + +GG+LTEAV + P++V+LLDE+EKAHPD+ + QV D G + D GR+ DF+N III Sbjct: 546 FDQGGLLTEAVNKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKTDFRNVIII 605 Query: 740 LTSNVASAQMMQACLNKTAQELPTPDELDALIRPQLVKAFKPAFLGRLK-VIPYYPIADE 798 +T+N + + + + T ++ DE+ + R F P F RL +I + P+ +E Sbjct: 606 MTTNAGAESLQKRTIGFTEKK-EAGDEMADIKR-----MFTPEFRNRLDAIISFRPLDEE 659 Query: 799 VLVEIIKLKLGRIAKRIAENHKAEFSYDKALVEAVLARCTEVDSGARNVDNILNGSLLPE 858 +++ ++ L ++ +++ E K E + +L + + + + GAR + ++ + Sbjct: 660 IILRVVDKFLMQLEEQLHEK-KVEAVFSDSLRKFLGKKGFDPLMGARPMSRLIQDLIRKA 718 Query: 859 IAESVL 864 +A+ +L Sbjct: 719 LADELL 724 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,524,419 Number of extensions: 104057 Number of successful extensions: 493 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 483 Number of HSP's successfully gapped: 5 Length of query: 891 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 797 Effective length of database: 1,174,780 Effective search space: 936299660 Effective search space used: 936299660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)