BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3918.p
         (375 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313317|ref|YP_003777409.1| hypothetical protein Hsero_4030...   618   e-178
gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755...   598   e-172

>gi|300313317|ref|YP_003777409.1| hypothetical protein Hsero_4030
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  618 bits (1594), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/375 (80%), Positives = 322/375 (85%)

Query: 1   MKLPTLKSLLGSKPLTSAIDPLLKPINDNHPGGEDLSFTADLDAIAEARRFDDPTLDQGE 60
           MKLPTLKS LG+K  T+ ID LLKPI++ HPGGEDLSFT DLDAIA+ARRFDDPTLDQGE
Sbjct: 1   MKLPTLKSALGTKLPTTVIDVLLKPISNEHPGGEDLSFTTDLDAIAQARRFDDPTLDQGE 60

Query: 61  WVTDIKEADWTFVEQRCAQLIETRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDH 120
           WVTDIKEADW+FVEQRCAQLIETRSKDLRLAVWY EAACKTRGLRGLGDGFLL+AGLFD 
Sbjct: 61  WVTDIKEADWSFVEQRCAQLIETRSKDLRLAVWYGEAACKTRGLRGLGDGFLLMAGLFDQ 120

Query: 121 FWDHLYPPSEDGDHDRRVGNLTWLLSRAAQMSREIALTEGRGTAFSLLDFDAARTRAANA 180
           FWDHLYP SEDGDHDRRVGNLTWLLSR+ QMS EI LTEGRG+AFSL DF++ARTRAANA
Sbjct: 121 FWDHLYPLSEDGDHDRRVGNLTWLLSRSVQMSHEIPLTEGRGSAFSLFDFNSARTRAANA 180

Query: 181 ERIANEGGQPEEGVKLAVMESARKRSSHAFYETMLADTQYGLQCLQQLEKSVDARLGVDG 240
           ERI NEGG PEEGVKLAVMESARKRSSHAFYE ML D QY   CL+QLE  VD RLGVDG
Sbjct: 181 ERIVNEGGLPEEGVKLAVMESARKRSSHAFYEAMLEDAQYCRHCLEQLENIVDHRLGVDG 240

Query: 241 PGFSAAREALTLVHDTVVRFAADTGLRSASPVEVETVQEDTPAAAEQTVDGGAAPNRSAQ 300
           PGFSAAREA  LVHDT+VRFAA+TGLRSA   E   +  D  A A Q    G + +   Q
Sbjct: 241 PGFSAAREATKLVHDTIVRFAAETGLRSAVSAESILIDGDDAAVAAQLTGSGGSASAVLQ 300

Query: 301 HNGPIRTRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKTVIKDNAAL 360
           H GPIRTRAEAI QLRAVAEFFRR+EPHSPVAHLADKAAQWGEMPLHAWL+TVIKD AAL
Sbjct: 301 HQGPIRTRAEAIGQLRAVAEFFRRSEPHSPVAHLADKAAQWGEMPLHAWLRTVIKDGAAL 360

Query: 361 SHVEELLGLQPPPQD 375
           SHVEELLGLQ P QD
Sbjct: 361 SHVEELLGLQAPQQD 375


>gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  598 bits (1542), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/377 (79%), Positives = 324/377 (85%), Gaps = 10/377 (2%)

Query: 1   MKLPTLKSLLGSKPLTSAIDPLLKPINDNHPGGEDLSFTADLDAIAEARRFDDPTLDQGE 60
           MKLPTLKSLLG KP  SAI+PLL PINDN P GEDLSFTADLDAIAEARRFDDPTLDQGE
Sbjct: 1   MKLPTLKSLLGGKPAMSAIEPLLNPINDNAPAGEDLSFTADLDAIAEARRFDDPTLDQGE 60

Query: 61  WVTDIKEADWTFVEQRCAQLIETRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDH 120
           WV DIKEADW FVEQ CA+L+E RSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFD 
Sbjct: 61  WVIDIKEADWPFVEQHCARLLEGRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDR 120

Query: 121 FWDHLYPPSEDGDHDRRVGNLTWLLSRAAQMSREIALTEGRGTAFSLLDFDAARTRAANA 180
           FWD++YP SE+GDHD+RVGNLTWLL+R+  MSREIALTEGRG+A+SL+DF+AARTRAANA
Sbjct: 121 FWDNMYPQSEEGDHDQRVGNLTWLLARSVAMSREIALTEGRGSAYSLIDFEAARTRAANA 180

Query: 181 ERIANEGGQPEEGVKLAVMESARKRSSHAFYETMLADTQYGLQCLQQLEKSVDARLGVDG 240
           ERIANEGGQPEEGVKLAVME+ARKRSSHAFYE MLAD+QY +Q L+QLEKSVDARLGV+G
Sbjct: 181 ERIANEGGQPEEGVKLAVMEAARKRSSHAFYEAMLADSQYCVQALEQLEKSVDARLGVNG 240

Query: 241 PGFSAAREALTLVHDTVVRFAADTGLRS-----ASPVEVETVQEDTPAAAEQTVDGGAAP 295
           PGFSAAREAL  V +TV RFAADTGLRS     ++           P + E+T   GA  
Sbjct: 241 PGFSAAREALIAVRETVARFAADTGLRSPQLQDSAASGAAADASAPPTSVEETPPAGAM- 299

Query: 296 NRSAQHNGPIRTRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKTVIK 355
                  GPIRTRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLK+VIK
Sbjct: 300 ----MQQGPIRTRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKSVIK 355

Query: 356 DNAALSHVEELLGLQPP 372
           D++ LSHVEELLGL PP
Sbjct: 356 DDSTLSHVEELLGLLPP 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,203,029
Number of extensions: 48221
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,207,925
Effective search space: 347882400
Effective search space used: 347882400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)