BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3915.p (1278 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310093|ref|YP_003774185.1| transmembrane protein [Herbaspi... 2344 0.0 gi|300313314|ref|YP_003777406.1| transmembrane protein [Herbaspi... 2228 0.0 >gi|300310093|ref|YP_003774185.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1291 Score = 2344 bits (6074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1135/1246 (91%), Positives = 1186/1246 (95%), Gaps = 1/1246 (0%) Query: 1 MQRLWHILSDTRTLIIIGFVALAAFLFIGADQLEVALTWAAVILGLLLLVWLAVWLYKRW 60 MQRLWH LSDTRTL+IIGF ALAAFLFIGA LE+ALTWAAVIL + LL WL WLY+RW Sbjct: 1 MQRLWHFLSDTRTLVIIGFAALAAFLFIGASTLELALTWAAVILAIALLCWLGYWLYRRW 60 Query: 61 KARRAANQLGDVLEKQASQPAPASSEGVQRDDVAALRTRMLEAINTIKTSKLGQKSGAAA 120 K RRAA +LG+VLE+QA+Q ASS+G QR++VAALRTRMLEAINTIKTSKLGQKSG+AA Sbjct: 61 KVRRAAGKLGEVLEQQATQSVAASSDGAQREEVAALRTRMLEAINTIKTSKLGQKSGSAA 120 Query: 121 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADESGKIVHGVGGTRNCDWFFTTDGILLDT 180 LYELPWYMVIGNPAAGKSTAIANSGLQFPFAD+ GKIVHGVGGTRNCDWFFTTDGILLDT Sbjct: 121 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDT 180 Query: 181 AGRYSVYEEDRNEWFSFLGLLKRYRKQAPINGIIIAVSVAELTGNRPEFAINLAKNLRQR 240 AGRYSVYEEDRNEWFSFLGLLKRYRKQAPINGIIIAVS+AELTGNRPEFAINLAKNLRQR Sbjct: 181 AGRYSVYEEDRNEWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR 240 Query: 241 VQELTEKLEVFAPVYVVFTKADLITGFNEFFLDTERSERDRVWGATLAYDRKRSGQEVSL 300 VQELTEKLEVFAPVYVVFTKADLITGFNEFFLDTERSERDRVWGATLAYDRKRSGQEV Sbjct: 241 VQELTEKLEVFAPVYVVFTKADLITGFNEFFLDTERSERDRVWGATLAYDRKRSGQEVVS 300 Query: 301 FFDERFDELYAGLKEMSLANMSVKRGENLAPGVLTFPLEFSAIKGALRSFVTTLFEENPF 360 FFDERFDELYAGLKEMSLA+MSVKRGEN+APGVLTFPLEFS+IKG LRSFV TLFEENPF Sbjct: 301 FFDERFDELYAGLKEMSLASMSVKRGENMAPGVLTFPLEFSSIKGVLRSFVATLFEENPF 360 Query: 361 QFKPVFRGFYFTSALQEGATVSASSQRIADRFGLTLEHKPQREISSKHGFFLHNLFKQVI 420 QFKPVFRGFYFTSA+QEGATVSASSQRIADRFGL LEHKPQREI S+HGFFLHNLFKQVI Sbjct: 361 QFKPVFRGFYFTSAVQEGATVSASSQRIADRFGLALEHKPQREIFSQHGFFLHNLFKQVI 420 Query: 421 FADKQLVAQYTSRNKIRMRYITFFAAVTVLGGLLGGWSWSYMGNRQLVANVQADMDKAVK 480 FADKQLVAQYTSR KIRMRY TFFAA+ +LG LLGGWSWSYMGNRQL+ANVQADMDKAVK Sbjct: 421 FADKQLVAQYTSRTKIRMRYATFFAAIAILGVLLGGWSWSYMGNRQLLANVQADMDKAVK 480 Query: 481 LQEKRLDLQSRFEALEILQDRIEQLDRYRASRPLSVGLGLYQGDLLERKLREEYFAGIKE 540 LQEKRLDLQSRFEALEILQDRIEQLDRYRASRP+SVG+GLYQGDLLERKLREEYF+GIKE Sbjct: 481 LQEKRLDLQSRFEALEILQDRIEQLDRYRASRPISVGMGLYQGDLLERKLREEYFSGIKE 540 Query: 541 IMLKPVASNIESYLMEVNANSGKLEPMSRPPQAGGITPVADNGVQPGNTLRTYKDSSATS 600 IMLKPVASNIESYLMEVNAN+ +LEPMSRPPQ+GGITPVADNG Q + LRTYKDSSATS Sbjct: 541 IMLKPVASNIESYLMEVNANAARLEPMSRPPQSGGITPVADNGAQAASALRTYKDSSATS 600 Query: 601 VEDAYNALKTYLMLADKSRAESSHLSDQITRFWRGWLETNRGTMPREQMIRSAERLISFS 660 VEDAYNALKTYLMLADKSRAESSHL+DQITRFWRGWLETNRGTMPREQMIRSAERLISFS Sbjct: 601 VEDAYNALKTYLMLADKSRAESSHLNDQITRFWRGWLETNRGTMPREQMIRSAERLISFS 660 Query: 661 LEQINDPSWPTIENKLTLVDQTRENLRRVVRGMPARERVYADVKARAATRFASMTVARIV 720 LEQINDPSWPTI+NKLTLVDQ RENLRRVVRGMPARERVYADVKARAATRFASMTVARIV Sbjct: 661 LEQINDPSWPTIDNKLTLVDQARENLRRVVRGMPARERVYADVKARAATRFASMTVARIV 720 Query: 721 GDKDKELVMGSYAIPGTFTRDAWEKFVQDAFKEAANKELQSADWVLKTSTKDDLTLEGSP 780 GDKD+ELVMGSYAIPGTFTRDAWEKFVQ+AFKEAANKELQSADWVLKTS KDDLTLEGSP Sbjct: 721 GDKDRELVMGSYAIPGTFTRDAWEKFVQEAFKEAANKELQSADWVLKTSAKDDLTLEGSP 780 Query: 781 EQIQKALVSQYKTEYAREWQKFLQGVSIVELHNLDDATNAMNRLGDPITSPLNKVINTVY 840 EQIQKALV+QYKTEYAREWQKFLQGVSIVEL NLDDATNAMNRLGDPITSP+ KVINTVY Sbjct: 781 EQIQKALVTQYKTEYAREWQKFLQGVSIVELRNLDDATNAMNRLGDPITSPMKKVINTVY 840 Query: 841 DETSWDNPSLVDAGLANASKGFMGWFKETILRRSPAPVPTQLNTDGSTAIPMGPVGREFA 900 DETSWDNPSLVDAGLANA GFMGWFKETILRRSPAP PTQ N DG+TAIPMGPVGREF+ Sbjct: 841 DETSWDNPSLVDAGLANAKSGFMGWFKETILRRSPAPAPTQFNADGTTAIPMGPVGREFS 900 Query: 901 GVARLVVSKDKGASLMRGYMENLSKLRTRLNTIKNQGDTGPGAKQLMQQTLEGSGSELSD 960 GVARLVVSKDK SL++ Y++NLSKLRTRLNTIKNQGDTGPGAKQLMQQTLEG+GSELSD Sbjct: 901 GVARLVVSKDKNGSLLQTYLDNLSKLRTRLNTIKNQGDTGPGAKQLMQQTLEGNGSELSD 960 Query: 961 SLKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGFNALVRPTEGEVNKIWRAQVYEPFQNNL 1020 SLKFVDEEMLPGLNDQQKT LRPLLVRPLVQGFNALVRPTEGEVNKIWRAQVYEPFQ+NL Sbjct: 961 SLKFVDEEMLPGLNDQQKTVLRPLLVRPLVQGFNALVRPTEGEVNKIWRAQVYEPFQSNL 1020 Query: 1021 AAKYPFSPNSKIEANSGEIGTVFGENGAISKFVTTAMGPLVVRRGDTLSPRKWADMGITL 1080 AAKYPFSPNSKIEANSGEIGTVFGENGAISKFVTTAMGPLVVRRGDTLSPRKWADMGI L Sbjct: 1021 AAKYPFSPNSKIEANSGEIGTVFGENGAISKFVTTAMGPLVVRRGDTLSPRKWADMGINL 1080 Query: 1081 SPAITTNFAEWISTPAGAGGNGGSAAADAQTVFQIQPQPAPGALEYTVEIDGQQLRYRNT 1140 SPAIT+NFA WIS P G G G A + AQTVFQIQPQPAPGALEYT+EIDGQQLRYRNT Sbjct: 1081 SPAITSNFASWISAPGGGGDANGGANS-AQTVFQIQPQPAPGALEYTIEIDGQQLRYRNT 1139 Query: 1141 QAQWTNFVWPNPQGAPGARVTAVTYDGRTVEVANQPGRFGLERLINTAQRKRKDNGVFEL 1200 QAQWTNF+WPNPQG PGARVTA TYDGRT+EVA+QPGRFGLERLIN+AQRKRKDNGVFEL Sbjct: 1140 QAQWTNFIWPNPQGTPGARVTAQTYDGRTIEVASQPGRFGLERLINSAQRKRKDNGVFEL 1199 Query: 1201 SWTNDGVTVVVNLKIISSAEVSGNANGTARGTAGLRGLKLPETIAG 1246 SWTN+GVTVVVNLKIISSAEVSG ANG ARGTA LRGLKLPETIAG Sbjct: 1200 SWTNEGVTVVVNLKIISSAEVSGTANGPARGTASLRGLKLPETIAG 1245 >gi|300313314|ref|YP_003777406.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1266 Score = 2228 bits (5774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1103/1252 (88%), Positives = 1169/1252 (93%), Gaps = 4/1252 (0%) Query: 1 MQRLWHILSDTRTLIIIGFVALAAFLFIGADQLEVALTWAAVILGLLLLVWLAVWLYKRW 60 MQRLW ILSDTR L ++GF+ALAA LFIGA+QLE+A W AV+ LLL WLA+ Y+RW Sbjct: 1 MQRLWKILSDTRVLTLLGFMALAAVLFIGAEQLELAPIWPAVLFCALLLAWLALRRYQRW 60 Query: 61 KARRAANQLGDVLEKQASQPAPASSEGVQRDDVAALRTRMLEAINTIKTSKLGQKSGAAA 120 KA+RAA +L +VLE+QA+QP P SE + DDVAALR RMLEAINTIKTSKLGQKSGAAA Sbjct: 61 KAQRAATKLENVLEQQAAQPLPVDSEAARHDDVAALRQRMLEAINTIKTSKLGQKSGAAA 120 Query: 121 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADESGKIVHGVGGTRNCDWFFTTDGILLDT 180 LYELPWYMVIGNPAAGKSTAIANSGLQFPFAD+ GKIVHGVGGTRNCDWFFTTDGILLDT Sbjct: 121 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDT 180 Query: 181 AGRYSVYEEDRNEWFSFLGLLKRYRKQAPINGIIIAVSVAELTGNRPEFAINLAKNLRQR 240 AGRYSVYEEDR EWFSFLGLLKRYRKQAPINGIIIAVS+AELTGNRPEFAINLAKNLRQR Sbjct: 181 AGRYSVYEEDRREWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR 240 Query: 241 VQELTEKLEVFAPVYVVFTKADLITGFNEFFLDTERSERDRVWGATLAYDRKRSGQEVSL 300 VQELTEKLEVFAPVYVVFTK DLITGFNEFFLD+ER ERDRVWGATLAYDRK SGQEVS Sbjct: 241 VQELTEKLEVFAPVYVVFTKTDLITGFNEFFLDSERGERDRVWGATLAYDRKHSGQEVSN 300 Query: 301 FFDERFDELYAGLKEMSLANMSVKRGENLAPGVLTFPLEFSAIKGALRSFVTTLFEENPF 360 FFDERFDELYAGLKEMSLANM+VKRGENLAPGVLTFPLEFSA KG LRSFVTTLFEENPF Sbjct: 301 FFDERFDELYAGLKEMSLANMAVKRGENLAPGVLTFPLEFSAFKGVLRSFVTTLFEENPF 360 Query: 361 QFKPVFRGFYFTSALQEGATVSASSQRIADRFGLTLEHKPQREISSKHGFFLHNLFKQVI 420 QFKPVFRGFYFTSALQEGAT+ AS+QRIADRFGLTLE +PQRE+ SK GFFLHNLFKQVI Sbjct: 361 QFKPVFRGFYFTSALQEGATLGASAQRIADRFGLTLEDQPQREVLSKQGFFLHNLFKQVI 420 Query: 421 FADKQLVAQYTSRNKIRMRYITFFAAVTVLGGLLGGWSWSYMGNRQLVANVQADMDKAVK 480 FADKQLVAQYTSRNKIRMRY+TFFAA+ +LG LLGGWSWSYMGNRQLVANVQADMDKA+K Sbjct: 421 FADKQLVAQYTSRNKIRMRYLTFFAALAMLGALLGGWSWSYMGNRQLVANVQADMDKAIK 480 Query: 481 LQEKRLDLQSRFEALEILQDRIEQLDRYRASRPLSVGLGLYQGDLLERKLREEYFAGIKE 540 LQEKRLDLQSRFEALEILQDRIEQLDRYR+ RP+S+ LGLYQGDLLERKLREEYFAGIKE Sbjct: 481 LQEKRLDLQSRFEALEILQDRIEQLDRYRSHRPVSIDLGLYQGDLLERKLREEYFAGIKE 540 Query: 541 IMLKPVASNIESYLMEVNANSGKLEPMSRPPQAGGITPVADNGVQPGNTLRTYKDSSATS 600 IMLKPVAS+IE+YL+EVNANS KLEPMSRPPQA + DN + GN LRTYKDSSAT+ Sbjct: 541 IMLKPVASSIENYLIEVNANSSKLEPMSRPPQADSLATTGDNNIHAGNALRTYKDSSATN 600 Query: 601 VEDAYNALKTYLMLADKSRAESSHLSDQITRFWRGWLETNRGTMPREQMIRSAERLISFS 660 VEDAYNALKTYLML+DKSRAE+SHL+DQITRFWRGWLETNRGTMPREQMIRSAERLISFS Sbjct: 601 VEDAYNALKTYLMLSDKSRAEASHLNDQITRFWRGWLETNRGTMPREQMIRSAERLISFS 660 Query: 661 LEQINDPSWPTIENKLTLVDQTRENLRRVVRGMPARERVYADVKARAATRFASMTVARIV 720 LEQI+DPSWPT ENKLTLVDQTRENLR VVRGMPARERVYADVKARAATRFASMTVARIV Sbjct: 661 LEQIDDPSWPTTENKLTLVDQTRENLRHVVRGMPARERVYADVKARAATRFASMTVARIV 720 Query: 721 GDKDKELVMGSYAIPGTFTRDAWEKFVQDAFKEAANKELQSADWVLKTSTKDDLTLEGSP 780 GDKD+ELVMGSYAIPGTFTR+AWEKFV+DAFKEAANKELQSADWVLKTS+K+DLTLEGSP Sbjct: 721 GDKDRELVMGSYAIPGTFTRNAWEKFVEDAFKEAANKELQSADWVLKTSSKEDLTLEGSP 780 Query: 781 EQIQKALVSQYKTEYAREWQKFLQGVSIVELHNLDDATNAMNRLGDPITSPLNKVINTVY 840 EQIQKALVSQYK+EYAREWQKFLQGVSIVELHNLDDATNAMNRLGDP+TSP+NKVI+TVY Sbjct: 781 EQIQKALVSQYKSEYAREWQKFLQGVSIVELHNLDDATNAMNRLGDPLTSPINKVISTVY 840 Query: 841 DETSWDNPSLVDAGLANASKGFMGWFKETILRRS--PAPVPTQLNTDGSTAIPMGPVGRE 898 DETSWDNPSL+ +GLA AS+G GWFKET+LRRS P P P QLNTDG AIPMGPV RE Sbjct: 841 DETSWDNPSLIGSGLATASRGLSGWFKETVLRRSPAPPPAPPQLNTDGGAAIPMGPVARE 900 Query: 899 FAGVARLVVSKDKGASLMRGYMENLSKLRTRLNTIKNQGDTGPGAKQLMQQTLEGSGSEL 958 FAGVARLVVSKDKG SLMRGYMENLSKLRTRLNTIKNQGDTGPGAKQLMQQTL+GSGSEL Sbjct: 901 FAGVARLVVSKDKGNSLMRGYMENLSKLRTRLNTIKNQGDTGPGAKQLMQQTLDGSGSEL 960 Query: 959 SDSLKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGFNALVRPTEGEVNKIWRAQVYEPFQN 1018 SD+LKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGFNALV PTEGE+NKIWRAQVYEPFQN Sbjct: 961 SDALKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGFNALVHPTEGELNKIWRAQVYEPFQN 1020 Query: 1019 NLAAKYPFSPNSKIEANSGEIGTVFGENGAISKFVTTAMGPLVVRRGDTLSPRKWADMGI 1078 NLA KYPFSP+SKIEANSGEI TVFGE+GAISKFVTTAMGPLVVRRGDTLSPRKWADMGI Sbjct: 1021 NLATKYPFSPSSKIEANSGEINTVFGESGAISKFVTTAMGPLVVRRGDTLSPRKWADMGI 1080 Query: 1079 TLSPAITTNFAEWISTPAGAGGNGGSAAADAQTVFQIQPQPAPGALEYTVEIDGQQLRYR 1138 TLSPAITT+FA+WIST G A DAQTVFQIQPQPAPGALEYT+EIDGQQLRYR Sbjct: 1081 TLSPAITTSFADWISTHGST--GAGGGAGDAQTVFQIQPQPAPGALEYTIEIDGQQLRYR 1138 Query: 1139 NTQAQWTNFVWPNPQGAPGARVTAVTYDGRTVEVANQPGRFGLERLINTAQRKRKDNGVF 1198 NTQAQW NFVWPNPQG+PGARVTAVTYDGRTVEVA+QPGRFGLERLINTAQRKRKDNG F Sbjct: 1139 NTQAQWVNFVWPNPQGSPGARVTAVTYDGRTVEVASQPGRFGLERLINTAQRKRKDNGAF 1198 Query: 1199 ELSWTNDGVTVVVNLKIISSAEVSGNANGTARGTAGLRGLKLPETIAGGEPA 1250 ELSWTN+GVTV+V+LKIISSAEVSGN +GTARGTAGLRGLKLPETIAGG A Sbjct: 1199 ELSWTNEGVTVMVSLKIISSAEVSGNGSGTARGTAGLRGLKLPETIAGGGSA 1250 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,578,600 Number of extensions: 144030 Number of successful extensions: 454 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 449 Number of HSP's successfully gapped: 2 Length of query: 1278 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1182 Effective length of database: 1,165,310 Effective search space: 1377396420 Effective search space used: 1377396420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)